Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 5.7e-126 454.5 273 100.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.8e-101 372.5 273 84.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 3.7e-101 372.1 275 79.6
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.7e-101 372.1 275 79.6
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.4e-100 369.4 287 76.3
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.0e-98 364.0 273 81.3
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.5e-97 360.1 280 82.1
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.9e-97 359.8 275 80.0
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.6e-96 356.7 278 76.3
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.7e-96 355.9 273 78.8
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 2.7e-96 355.9 274 80.7
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.7e-96 355.9 274 74.5
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.4e-95 353.6 269 72.1
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 4.0e-95 352.1 278 77.0
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.5e-94 350.1 277 70.8
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.5e-94 350.1 273 70.3
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.6e-94 349.4 275 81.1
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 3.3e-94 349.0 278 72.7
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.4e-94 348.6 273 75.5
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 9.7e-94 347.4 276 80.1
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.3e-93 347.1 278 77.3
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.7e-93 346.7 289 75.1
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 8.3e-93 344.4 274 78.5
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.8e-92 343.2 283 73.5
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.4e-92 342.8 177 100.0
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 3.1e-92 342.4 282 72.0
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 7.0e-92 341.3 273 72.2
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.2e-91 340.5 273 72.9
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 2.0e-91 339.7 277 78.7
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 2.0e-91 339.7 270 77.8
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.7e-91 339.3 273 76.9
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.7e-91 339.3 308 73.7
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.5e-91 339.0 288 67.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 4.5e-91 338.6 268 68.7
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 4.5e-91 338.6 277 74.7
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.0e-90 337.4 274 66.8
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 6.5e-90 334.7 273 71.8
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 6.5e-90 334.7 275 73.1
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 8.5e-90 334.3 268 67.5
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 8.5e-90 334.3 280 73.2
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 8.5e-90 334.3 278 69.8
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 4.2e-89 332.0 277 71.8
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 7.2e-89 331.3 279 71.7
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.2e-88 330.5 273 72.9
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 1.6e-88 330.1 278 70.5
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.6e-88 330.1 275 66.5
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 3.6e-88 328.9 277 76.5
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 6.1e-88 328.2 278 71.6
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.8e-87 326.6 278 75.2
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 5.2e-87 325.1 253 77.5
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 1.2e-86 323.9 278 70.9
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.5e-86 323.6 274 74.1
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.7e-85 320.1 292 72.6
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.2e-85 319.7 275 63.3
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.8e-85 318.5 275 63.6
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 1.4e-84 317.0 279 70.6
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.1e-84 315.8 279 70.3
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 3.5e-83 312.4 271 76.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.8e-80 302.8 274 65.7
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 4.7e-80 302.0 275 70.2
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 1.8e-79 300.1 276 71.4
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.8e-79 300.1 271 68.3
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 3.0e-79 299.3 275 68.7
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 5.2e-79 298.5 169 89.9
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.6e-78 296.2 297 68.4
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 9.8e-78 294.3 275 58.5
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 4.9e-77 292.0 303 63.7
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 2.4e-76 289.7 282 69.5
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.6e-75 287.0 275 67.6
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.6e-75 287.0 275 70.9
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.9e-75 285.0 276 69.6
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.0e-74 284.3 277 65.7
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.5e-73 280.4 273 63.0
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 3.3e-73 279.3 314 59.2
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.8e-72 276.2 273 69.6
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.8e-72 276.2 273 69.6
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 3.6e-72 275.8 273 68.1
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 5.2e-71 271.9 277 59.2
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 5.2e-71 271.9 273 59.7
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 8.9e-71 271.2 273 67.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.4e-70 268.9 271 68.6
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 8.3e-69 264.6 281 62.3
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 2.3e-66 256.5 273 61.2
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 8.6e-66 254.6 290 64.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 7.3e-65 251.5 277 64.6
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 7.3e-65 251.5 277 64.6
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.2e-64 248.4 305 51.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.8e-63 246.9 279 60.2
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 2.3e-63 246.5 278 57.9
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.0e-63 245.7 279 59.5
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 6.8e-63 245.0 275 52.7
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 6.8e-63 245.0 275 52.7
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 6.8e-63 245.0 278 63.7
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 6.4e-61 238.4 275 62.5
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 8.3e-61 238.0 275 54.5
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 8.3e-61 238.0 275 54.5
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 8.3e-61 238.0 275 54.5
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 9.2e-60 234.6 283 55.8
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.6e-59 233.8 285 55.4
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.7e-59 233.0 161 72.7
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 2.5e-57 226.5 184 64.7
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.3e-57 225.7 281 49.8
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.8e-56 223.0 257 63.4
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.3e-53 214.2 275 53.1
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.2e-53 213.4 283 54.1
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 3.7e-53 212.6 283 58.7
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.4e-52 210.7 247 62.3
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.7e-50 203.8 277 52.7
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.1e-48 196.8 277 57.8
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.1e-47 193.0 161 65.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.2e-46 191.0 128 71.1
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 7.1e-44 181.8 137 67.2
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 7.3e-41 171.8 116 73.3
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 5.3e-39 165.6 161 78.9
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.6e-38 163.3 227 48.0
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.6e-38 161.8 163 56.4
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.0e-35 152.1 130 64.6
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.5e-30 137.5 79 81.0
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 3.5e-27 126.3 144 50.0
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 2.3e-26 123.6 128 64.8
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.9e-25 120.6 66 87.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.0e-22 110.5 97 63.9
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 4.5e-22 109.4 95 64.2
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.5e-22 109.4 95 64.2
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 6.5e-21 105.5 130 53.1
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 3.1e-15 86.7 63 69.8
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 5.3e-15 85.9 63 68.3
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.5e-14 84.3 48 79.2
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 2.7e-11 73.6 54 74.1
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.0e-10 70.1 66 59.1
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.6e-08 64.3 101 40.6
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 5.3e-07 59.3 29 86.2
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.9e-07 58.9 105 37.1
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 6.9e-07 58.9 59 54.2
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 2.0e-06 57.4 80 37.5
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 3.4e-06 56.6 105 36.2
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 4.5e-06 56.2 60 45.0
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 4.5e-06 56.2 68 39.7
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 4.5e-06 56.2 95 34.7
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 5.9e-06 55.8 71 35.2
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.9e-06 55.8 124 32.3
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 5.9e-06 55.8 68 39.7
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 5.9e-06 55.8 68 39.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 7.7e-06 55.5 101 30.7
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 7.7e-06 55.5 116 33.6
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 7.7e-06 55.5 68 38.2
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 7.7e-06 55.5 95 37.9
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 7.7e-06 55.5 76 42.1
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 7.7e-06 55.5 71 35.2
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 1.0e-05 55.1 50 50.0
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 1.0e-05 55.1 64 40.6


User provided reference genes

Program Settings