Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 4.8e-103 377.9 194 100.0
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.5e-64 247.7 123 100.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 7.5e-56 221.1 124 87.1
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.3e-55 220.3 124 84.7
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 4.1e-54 215.3 124 85.5
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 3.5e-53 212.2 124 83.1
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 7.7e-53 211.1 123 80.5
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 5.6e-51 204.9 124 79.8
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.1e-50 203.0 124 79.8
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 8.0e-50 201.1 124 79.0
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 8.0e-50 201.1 122 80.3
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.4e-49 200.3 124 75.0
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.4e-49 200.3 123 77.2
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.8e-49 199.9 123 78.0
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.8e-49 199.9 124 77.4
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.3e-49 199.5 124 79.8
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 2.3e-49 199.5 123 80.5
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 6.8e-49 198.0 124 79.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 8.9e-49 197.6 123 76.4
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.2e-48 197.2 123 76.4
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.5e-48 196.8 124 75.0
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.5e-48 196.8 124 75.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.5e-48 196.8 136 73.5
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.5e-48 196.8 136 73.5
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.5e-48 196.8 124 77.4
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.5e-48 196.8 124 79.0
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.0e-48 196.4 124 79.0
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 3.4e-48 195.7 124 75.0
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 3.4e-48 195.7 124 74.2
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 7.5e-48 194.5 123 74.0
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.5e-48 194.5 136 72.8
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 7.5e-48 194.5 124 76.6
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 9.8e-48 194.1 121 78.5
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.3e-47 193.7 124 78.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.3e-47 193.7 124 78.2
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.3e-47 193.7 124 75.8
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.7e-47 193.4 124 76.6
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.2e-47 193.0 124 76.6
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-47 192.6 124 76.6
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 2.9e-47 192.6 124 76.6
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.7e-47 192.2 124 75.8
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.4e-47 191.4 124 75.8
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 6.4e-47 191.4 124 75.8
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.2e-46 189.1 124 72.6
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 5.4e-46 188.3 122 73.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.4e-46 188.3 124 75.0
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 5.4e-46 188.3 124 74.2
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 7.0e-46 188.0 112 78.6
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 7.0e-46 188.0 124 74.2
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 9.2e-46 187.6 123 74.0
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 9.2e-46 187.6 124 73.4
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.2e-45 187.2 132 73.5
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.2e-45 187.2 142 67.6
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.6e-45 186.8 124 74.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.6e-45 186.8 124 71.8
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 3.5e-45 185.7 122 72.1
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 5.9e-45 184.9 124 78.2
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 7.8e-45 184.5 124 71.8
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.0e-44 184.1 123 72.4
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 8.6e-44 181.0 122 69.7
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.1e-43 180.6 123 69.9
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.1e-43 180.6 122 69.7
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.5e-43 180.3 124 69.4
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.5e-43 180.3 124 71.8
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.9e-43 179.9 124 69.4
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.9e-43 179.9 124 69.4
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 5.6e-43 178.3 122 76.2
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.0e-41 174.1 124 67.7
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.8e-41 173.3 125 66.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 2.3e-41 172.9 120 68.3
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 5.2e-41 171.8 124 66.9
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 2.0e-40 169.9 122 66.4
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 4.4e-40 168.7 124 65.3
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.4e-40 168.7 124 65.3
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 5.8e-40 168.3 122 66.4
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 5.8e-40 168.3 144 58.3
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 7.5e-40 167.9 124 64.5
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 7.5e-40 167.9 124 69.4
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.3e-39 167.2 124 65.3
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.3e-39 167.2 124 65.3
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.7e-39 166.8 123 63.4
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 6.4e-39 164.9 124 64.5
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 8.3e-39 164.5 124 63.7
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.1e-38 164.1 124 63.7
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.4e-38 163.7 125 66.4
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.9e-38 163.3 124 64.5
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.9e-38 163.3 124 64.5
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.2e-38 162.5 125 64.8
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.2e-37 160.6 124 64.5
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 4.6e-37 158.7 124 59.7
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.6e-37 158.7 123 66.7
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 5.0e-36 155.2 124 63.7
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-35 154.1 104 74.0
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.5e-35 151.0 104 72.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 8.1e-34 147.9 122 57.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 8.9e-33 144.4 122 60.7
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 9.8e-32 141.0 121 60.3
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.5e-29 132.5 115 58.3
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.6e-27 125.2 86 75.6
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 7.3e-27 124.8 168 44.6
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.6e-26 123.6 144 47.2
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 3.1e-25 119.4 124 46.0
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 4.4e-24 115.5 84 70.2
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.9e-23 112.8 110 55.5
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 8.4e-23 111.3 142 46.5
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.3e-20 103.2 74 67.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-20 102.4 71 73.2
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.7e-18 95.5 130 50.8
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.2e-17 92.0 60 76.7
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.5e-16 90.5 82 51.2
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.4e-15 85.1 71 56.3
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.9e-14 83.6 65 64.6
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.6e-13 79.0 63 63.5
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.3e-12 76.6 66 54.5
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.1e-10 70.1 41 73.2
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-09 66.6 120 40.8
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 3.4e-08 62.8 47 55.3
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 3.4e-08 62.8 47 55.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.9e-07 58.9 52 63.5
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 4.2e-06 55.8 56 55.4
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 4.2e-06 55.8 45 48.9
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 4.2e-06 55.8 45 48.9


User provided reference genes

Program Settings