Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 4.0e-176 621.3 313 100.0
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.1e-148 529.3 313 84.3
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.9e-139 498.4 313 78.6
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.3e-138 495.0 313 78.0
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.5e-135 486.5 319 77.4
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 7.6e-135 484.2 313 78.3
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 4.6e-132 474.9 335 73.1
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.3e-131 472.6 313 75.1
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 1.1e-130 470.3 316 74.7
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 7.4e-130 467.6 316 72.5
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.1e-128 463.8 303 75.9
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 4.1e-128 461.8 316 72.2
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 9.1e-128 460.7 308 72.1
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.2e-127 460.3 308 72.1
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.6e-127 459.1 319 69.9
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.6e-127 459.1 308 71.8
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.9e-127 458.0 316 72.2
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 7.7e-127 457.6 311 71.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.0e-126 457.2 308 74.4
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.0e-126 457.2 316 73.4
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.3e-126 456.8 309 73.1
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.2e-125 451.8 314 71.0
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 5.5e-125 451.4 316 72.2
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.6e-124 449.9 308 73.4
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 4.7e-124 448.4 313 70.9
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 3.9e-123 445.3 316 71.5
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 5.1e-123 444.9 319 72.1
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 8.8e-123 444.1 313 70.3
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 8.8e-123 444.1 316 71.2
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 3.3e-122 442.2 311 69.5
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 3.3e-122 442.2 313 69.0
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.7e-122 441.4 310 69.0
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 7.4e-122 441.0 304 73.0
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 9.7e-122 440.7 363 62.3
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.7e-121 439.9 312 67.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 4.8e-121 438.3 313 69.0
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.4e-120 436.8 313 69.6
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.8e-120 436.4 283 77.0
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 3.1e-120 435.6 281 77.2
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 5.3e-120 434.9 313 68.7
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 2.2e-118 429.5 313 69.0
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 2.2e-118 429.5 312 67.6
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 6.5e-118 427.9 315 67.9
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.5e-117 426.0 312 67.6
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.5e-117 426.0 316 69.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.5e-117 426.0 279 73.1
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 3.2e-117 425.6 312 66.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 4.2e-117 425.2 311 67.2
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 5.5e-117 424.9 311 65.9
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 7.2e-117 424.5 281 69.4
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 9.4e-117 424.1 312 65.7
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.6e-116 423.3 314 65.3
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 2.7e-116 422.5 311 65.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 3.0e-115 419.1 310 65.5
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.9e-115 418.7 310 65.2
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 6.7e-115 417.9 308 66.9
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 8.8e-115 417.5 308 66.9
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 2.0e-114 416.4 311 65.9
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.7e-114 414.8 325 62.8
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.2e-113 412.9 311 65.9
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.2e-113 412.9 311 65.9
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.7e-113 412.1 315 65.7
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 3.7e-113 412.1 282 71.3
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 8.2e-113 411.0 311 65.6
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.4e-112 410.2 268 73.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.4e-112 409.5 310 65.5
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 5.3e-112 408.3 312 65.1
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-111 407.1 311 65.0
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.3e-110 403.7 312 64.7
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.2e-110 402.9 307 66.1
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 3.8e-110 402.1 315 64.8
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.9e-109 399.8 312 65.4
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.6e-108 396.7 276 69.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 3.6e-108 395.6 326 62.3
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 4.7e-108 395.2 291 66.0
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 2.3e-107 392.9 327 58.4
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 4.0e-107 392.1 311 64.3
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.6e-106 389.4 334 57.2
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 3.3e-106 389.0 312 62.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 9.7e-106 387.5 280 68.2
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.3e-105 387.1 310 61.6
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 3.8e-102 375.6 233 83.7
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 5.5e-101 371.7 276 67.8
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 5.5e-101 371.7 321 57.9
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.7e-100 368.6 312 62.5
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.4e-99 367.1 240 76.7
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 8.8e-99 364.4 279 65.9
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.8e-97 359.4 286 61.5
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.8e-97 359.4 314 57.3
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.2e-95 354.0 240 72.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.0e-94 350.9 309 57.9
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.9e-94 349.4 309 57.6
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 3.8e-94 349.0 311 58.2
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.5e-93 347.1 265 62.3
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.2e-92 344.0 313 58.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.8e-92 342.8 307 57.3
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 3.6e-92 342.4 309 57.0
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 3.6e-92 342.4 307 57.7
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 4.7e-92 342.0 314 56.1
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 6.1e-92 341.7 307 57.0
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.0e-91 340.9 307 56.4
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 3.0e-91 339.3 307 56.7
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 6.8e-91 338.2 309 55.7
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 6.8e-91 338.2 307 56.4
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 6.8e-91 338.2 307 56.4
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 8.9e-91 337.8 275 63.6
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.0e-90 336.7 307 57.0
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 4.4e-90 335.5 307 56.7
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 4.4e-90 335.5 280 60.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 5.7e-90 335.1 307 56.7
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.3e-89 334.0 307 56.7
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 1.7e-89 333.6 307 56.4
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 3.7e-89 332.4 307 56.4
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.0e-87 326.6 258 65.1
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.7e-87 326.2 299 56.2
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 3.8e-86 322.4 266 60.2
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 9.5e-85 317.8 311 55.0
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 3.6e-76 289.3 276 52.9
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.1e-75 287.7 318 50.0
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 6.8e-75 285.0 279 51.6
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 2.2e-73 280.0 322 45.3
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 4.9e-65 252.3 199 62.8
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.2e-50 204.5 191 53.9
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.5e-50 204.1 170 60.6
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 4.9e-49 199.1 195 57.9
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.1e-43 181.4 137 64.2
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 6.4e-41 172.2 282 40.8
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.1e-38 162.5 109 67.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 6.9e-35 152.1 111 65.8
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 4.0e-27 126.3 113 56.6
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 3.7e-12 76.6 257 30.4
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.4e-11 73.9 138 38.4


User provided reference genes

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