Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0046F.1_g027630 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 5.0e-47 190.7 90 100.0
Hma1.2p1_0548F.1_g176655 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 5.0e-47 190.7 90 100.0
Hma1.2p1_0576F.1_g181940 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 3.5e-40 167.9 88 88.6
PSO832G3897 Papaver somniferum HOM05D002364 ORTHO05D002540 1.1e-36 156.4 88 80.7
TAR362G1303 Trochodendron aralioides HOM05D002364 ORTHO05D002540 3.1e-36 154.8 88 79.5
TAR633G0449 Trochodendron aralioides HOM05D002364 ORTHO05D002540 4.0e-36 154.5 88 79.5
PSO210G6351 Papaver somniferum HOM05D002364 ORTHO05D002540 8.9e-36 153.3 88 79.5
Atru.chr5.1730 Acer truncatum HOM05D002364 ORTHO05D002540 1.5e-35 152.5 88 79.5
Dinv34638 Davidia involucrata HOM05D002364 ORTHO05D002540 3.4e-35 151.4 88 78.4
Lsat_1_v5_gn_5_182881 Lactuca sativa HOM05D002364 ORTHO05D002540 5.8e-35 150.6 86 77.9
Nn3g19697 Nelumbo nucifera HOM05D002364 ORTHO05D002540 5.8e-35 150.6 88 77.3
MBI07_g16901_MAGBIO Magnolia biondii HOM05D002403 ORTHO05D002724 7.5e-35 150.2 88 76.1
GSVIVG01028358001 Vitis vinifera HOM05D002364 ORTHO05D002540 7.5e-35 150.2 88 77.3
Solyc06g008340.4 Solanum lycopersicum HOM05D002364 ORTHO05D002540 9.8e-35 149.8 89 79.8
Ciclev10021562m.g Citrus clementina HOM05D002364 ORTHO05D002540 1.3e-34 149.4 88 78.4
Peaxi162Scf00624g00314 Petunia axillaris HOM05D002364 ORTHO05D002540 1.3e-34 149.4 85 80.0
Thecc.01G255800 Theobroma cacao HOM05D002364 ORTHO05D002540 1.3e-34 149.4 86 79.1
Gohir.D07G156200 Gossypium hirsutum HOM05D002364 ORTHO05D002540 1.7e-34 149.1 86 77.9
Gorai.001G179100 Gossypium raimondii HOM05D002364 ORTHO05D002540 1.7e-34 149.1 86 77.9
MD10G1181300 Malus domestica HOM05D002364 ORTHO05D002540 1.7e-34 149.1 85 80.0
CDE04G0285 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 2.2e-34 148.7 88 76.1
Lsat_1_v5_gn_9_10500 Lactuca sativa HOM05D002364 ORTHO05D002540 2.2e-34 148.7 86 76.7
Nitab4.5_0000326g0150 Nicotiana tabacum HOM05D002364 ORTHO05D002540 2.2e-34 148.7 85 80.0
Aqoxy5G00208 Aquilegia oxysepala HOM05D002364 ORTHO05D002540 2.9e-34 148.3 85 78.8
HanXRQChr15g0467691 Helianthus annuus HOM05D002364 ORTHO05D002540 2.9e-34 148.3 86 76.7
Gohir.A07G149900 Gossypium hirsutum HOM05D002364 ORTHO05D002540 3.7e-34 147.9 86 76.7
COL.COLO4_04022 Corchorus olitorius HOM05D002364 ORTHO05D002540 4.9e-34 147.5 86 76.7
PGR044G1680 Punica granatum HOM05D002364 ORTHO05D002540 4.9e-34 147.5 85 78.8
PGSC0003DMG400010315 Solanum tuberosum HOM05D002364 ORTHO05D002540 4.9e-34 147.5 85 78.8
DCAR_018494 Daucus carota HOM05D002364 ORTHO05D002540 6.4e-34 147.1 85 75.3
FAN15G1886 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.4e-34 147.1 85 77.6
FAN20G2656 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.4e-34 147.1 85 77.6
FAN27G1824 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.4e-34 147.1 85 77.6
HanXRQChr16g0523891 Helianthus annuus HOM05D002364 ORTHO05D002540 6.4e-34 147.1 86 75.6
Oeu039672.2 Olea europaea HOM05D002364 ORTHO05D002540 6.4e-34 147.1 85 78.8
Prupe.8G221400 Prunus persica HOM05D002364 ORTHO05D002540 6.4e-34 147.1 85 78.8
vmacro02675 Vaccinium macrocarpon HOM05D002364 ORTHO05D002540 6.4e-34 147.1 90 76.7
MD05G1194700 Malus domestica HOM05D002364 ORTHO05D002540 8.3e-34 146.7 85 78.8
Sopen06g003190 Solanum pennellii HOM05D002364 ORTHO05D002540 8.3e-34 146.7 89 77.5
Sopen09g028220 Solanum pennellii HOM05D002364 ORTHO05D002540 8.3e-34 146.7 85 78.8
Cc01_g18190 Coffea canephora HOM05D002364 ORTHO05D002540 1.1e-33 146.4 83 79.5
Duzib138G1348 Durio zibethinus HOM05D002364 ORTHO05D002540 1.1e-33 146.4 86 76.7
FvH4_2g21210 Fragaria vesca HOM05D002364 ORTHO05D002540 1.1e-33 146.4 85 77.6
FAN24G3112 Fragaria x ananassa HOM05D002364 ORTHO05D002540 1.1e-33 146.4 85 77.6
Nitab4.5_0005593g0010 Nicotiana tabacum HOM05D002364 ORTHO05D002540 1.1e-33 146.4 85 77.6
Nitab4.5_0006107g0010 Nicotiana tabacum HOM05D002364 ORTHO05D002540 1.1e-33 146.4 85 78.8
Gohir.A07G213780 Gossypium hirsutum HOM05D002364 ORTHO05D002540 1.4e-33 146.0 86 76.7
Gorai.001G254400 Gossypium raimondii HOM05D002364 ORTHO05D002540 1.4e-33 146.0 86 76.7
RcHm_v2.0_Chr6g0287711 Rosa chinensis HOM05D002364 ORTHO05D002540 1.4e-33 146.0 85 77.6
Zm00001eb221890 Zea mays HOM05D002364 ORTHO05D002540 1.4e-33 146.0 85 77.6
ATR0736G205 Amborella trichopoda HOM05D002364 ORTHO05D002540 1.9e-33 145.6 85 76.5
MSTRG.18329 Avicennia marina HOM05D002364 ORTHO05D002540 2.4e-33 145.2 85 78.8
Nitab4.5_0007062g0030 Nicotiana tabacum HOM05D002364 ORTHO05D002540 2.4e-33 145.2 85 77.6
Os10g0476000 Oryza sativa ssp. japonica HOM05D002364 ORTHO05D002540 2.4e-33 145.2 88 73.9
PGSC0003DMG401025510 Solanum tuberosum HOM05D002364 ORTHO05D002540 2.4e-33 145.2 85 77.6
PGSC0003DMG402025510 Solanum tuberosum HOM05D002364 ORTHO05D002540 2.4e-33 145.2 85 77.6
CDE07G2052 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 3.2e-33 144.8 88 75.0
Duzib211G0026 Durio zibethinus HOM05D002364 ORTHO05D002540 3.2e-33 144.8 86 76.7
Gohir.D07G220100 Gossypium hirsutum HOM05D002364 ORTHO05D002540 4.1e-33 144.4 86 75.6
MSTRG.21483 Avicennia marina HOM05D002364 ORTHO05D002540 5.4e-33 144.1 83 79.5
CSS0042466 Camellia sinensis var. sinensis HOM05D002364 ORTHO05D002540 5.4e-33 144.1 85 76.5
CANSAT01G0103 Cannabis sativa HOM05D002364 ORTHO05D002540 5.4e-33 144.1 85 76.5
ClCG00G001490 Citrullus lanatus HOM05D002364 ORTHO05D002540 5.4e-33 144.1 85 77.6
ClCG07G001150 Citrullus lanatus HOM05D002364 ORTHO05D002540 5.4e-33 144.1 85 77.6
Eucgr.K03254 Eucalyptus grandis HOM05D002364 ORTHO05D002540 5.4e-33 144.1 85 77.6
Sed0010821 Sechium edule HOM05D002364 ORTHO05D002540 5.4e-33 144.1 85 77.6
Cpa.g.sc165.15 Carica papaya HOM05D002364 ORTHO05D002540 7.0e-33 143.7 88 72.7
Potri.002G036400 Populus trichocarpa HOM05D002364 ORTHO05D002540 7.0e-33 143.7 85 75.3
Actinidia07306 Actinidia chinensis HOM05D002364 ORTHO05D002540 9.2e-33 143.3 85 76.5
Migut.D00440 Erythranthe guttata HOM05D002364 ORTHO05D002540 9.2e-33 143.3 85 76.5
Phvul.007G191700 Phaseolus vulgaris HOM05D002364 ORTHO05D002540 9.2e-33 143.3 86 74.4
QL09p039635 Quercus lobata HOM05D002364 ORTHO05D002540 9.2e-33 143.3 89 74.2
Sabra05G0174800 Salix brachista HOM05D002364 ORTHO05D002540 9.2e-33 143.3 85 74.1
Sed0018557 Sechium edule HOM05D002364 ORTHO05D002540 9.2e-33 143.3 85 75.3
HanXRQChr10g0280811 Helianthus annuus HOM05D002364 ORTHO05D002540 1.2e-32 142.9 85 74.1
Potri.005G226400 Populus trichocarpa HOM05D002364 ORTHO05D002540 1.2e-32 142.9 85 74.1
unitig_8.g3736 Utricularia gibba HOM05D002364 ORTHO05D002540 1.6e-32 142.5 85 76.5
Lalb_Chr02g0152561 Lupinus albus HOM05D002364 ORTHO05D002540 2.1e-32 142.1 84 75.0
SGA_v2.0_scaffold6G03209 Striga asiatica HOM05D002364 ORTHO05D002540 2.1e-32 142.1 87 78.2
THA.LOC104801150 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 2.1e-32 142.1 83 77.1
HPP92_008551 Vanilla planifolia HOM05D002364 ORTHO05D002540 2.1e-32 142.1 88 75.0
Oeu039147.1 Olea europaea HOM05D002364 ORTHO05D002540 2.7e-32 141.7 85 76.5
VMungo0720G3189 Vigna mungo HOM05D002364 ORTHO05D002540 3.5e-32 141.4 86 73.3
CARHR003220 Cardamine hirsuta HOM05D002364 ORTHO05D002540 4.6e-32 141.0 83 77.1
MELO3C012869.2 Cucumis melo HOM05D002364 ORTHO05D002540 4.6e-32 141.0 85 75.3
CsaV3_3G022120 Cucumis sativus L. HOM05D002364 ORTHO05D002540 4.6e-32 141.0 85 75.3
Lj1A69G67 Lonicera japonica HOM05D002364 ORTHO05D002540 4.6e-32 141.0 85 74.1
Manes.13G035500 Manihot esculenta HOM05D002364 ORTHO05D002540 4.6e-32 141.0 85 75.3
AT1G03900 Arabidopsis thaliana HOM05D002364 ORTHO05D002540 6.0e-32 140.6 83 77.1
Carub.0001s0304 Capsella rubella HOM05D002364 ORTHO05D002540 6.0e-32 140.6 83 75.9
Ca_09671_v3 Cicer arietinum L. HOM05D002364 ORTHO05D002540 6.0e-32 140.6 89 74.2
THA.LOC104826045 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 6.0e-32 140.6 83 77.1
Manes.13G035700 Manihot esculenta HOM05D002364 ORTHO05D002540 1.0e-31 139.8 85 74.1
TWI75G1021 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 1.0e-31 139.8 85 74.1
AL1G13480 Arabidopsis lyrata HOM05D002364 ORTHO05D002540 1.3e-31 139.4 83 77.1
BraA08t35616Z Brassica rapa HOM05D002364 ORTHO05D002540 1.3e-31 139.4 83 75.9
SalBow4G1524 Salvia bowleyana HOM05D002364 ORTHO05D002540 1.3e-31 139.4 85 74.1
TWI18G0990 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 1.3e-31 139.4 85 74.1
BcaC05g24487 Brassica carinata HOM05D002364 ORTHO05D002540 1.7e-31 139.0 83 75.9
BcaC05g24490 Brassica carinata HOM05D002364 ORTHO05D002540 1.7e-31 139.0 83 75.9
A08p37160 Brassica napus HOM05D002403 ORTHO05D002724 1.7e-31 139.0 83 75.9
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 1.7e-31 139.0 83 75.9
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 1.7e-31 139.0 83 75.9
C08p00830 Brassica napus HOM05D002403 ORTHO05D002724 1.7e-31 139.0 83 75.9
BolC5t29002H Brassica oleracea HOM05D002364 ORTHO05D002540 1.7e-31 139.0 83 75.9
BolC8t46881H Brassica oleracea HOM05D002364 ORTHO05D002540 1.7e-31 139.0 83 75.9
BraA10t42512Z Brassica rapa HOM05D002364 ORTHO05D002540 1.7e-31 139.0 83 75.9
Glyma.13G124500 Glycine max HOM05D002364 ORTHO05D002540 1.7e-31 139.0 85 74.1
Psat6g054200 Pisum sativum HOM05D002364 ORTHO05D002540 1.7e-31 139.0 85 75.3
Sp1g02750 Schrenkiella parvula HOM05D002364 ORTHO05D002540 2.3e-31 138.7 83 75.9
Medtr1g069765 Medicago truncatula HOM05D002364 ORTHO05D002540 3.9e-31 137.9 85 74.1
Glyma.10G038100 Glycine max HOM05D002364 ORTHO05D002540 6.6e-31 137.1 86 72.1
TPR.G5923 Trifolium pratense HOM05D002364 ORTHO05D002540 6.6e-31 137.1 89 71.9
TWI12G0280 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 1.1e-30 136.3 84 72.6
Lj5g0013714 Lotus japonicus HOM05D002364 ORTHO05D002540 1.5e-30 136.0 89 71.9
Lalb_Chr21g0313971 Lupinus albus HOM05D002364 ORTHO05D002540 1.5e-30 136.0 84 72.6
SGA_v2.0_scaffold6G03211 Striga asiatica HOM05D002364 ORTHO05D002540 1.5e-30 136.0 83 74.7
Hund09609 Selenicereus undatus HOM05D002364 ORTHO05D002540 1.9e-30 135.6 83 74.7
Aa31LG5G3150 Aethionema arabicum HOM05D002364 ORTHO05D002540 3.3e-30 134.8 83 73.5
arahy.Tifrunner.gnm1.ann1.S0A29X Arachis hypogaea HOM05D002364 ORTHO05D002540 3.3e-30 134.8 84 70.2
CiPaw.04G187900 Carya illinoinensis HOM05D002364 ORTHO05D002540 4.3e-30 134.4 86 74.4
arahy.Tifrunner.gnm1.ann1.47VIJ3 Arachis hypogaea HOM05D002364 ORTHO05D002540 7.3e-30 133.7 84 70.2
CAN.G1855.1 Capsicum annuum HOM05D002364 ORTHO05D002540 7.3e-30 133.7 85 75.3
Rhsim13G0036200 Rhododendron simsii HOM05D002364 ORTHO05D002540 9.5e-30 133.3 92 72.8
Sp2g08940 Schrenkiella parvula HOM05D002364 ORTHO05D002540 9.5e-30 133.3 88 71.6
Cfa002444 Carpinus fangiana HOM05D002364 ORTHO05D002540 1.2e-29 132.9 86 73.3
Haze_24665 Corylus avellana HOM05D002364 ORTHO05D002540 1.2e-29 132.9 86 73.3
CiPaw.03G266300 Carya illinoinensis HOM05D002364 ORTHO05D002540 4.7e-29 131.0 86 72.1
AUR62011857 Chenopodium quinoa HOM05D002364 ORTHO05D002540 4.7e-29 131.0 81 72.8
AUR62024702 Chenopodium quinoa HOM05D002364 ORTHO05D002540 4.7e-29 131.0 81 72.8
Ah.02g112020 Amaranthus hybridus HOM05D002364 ORTHO05D002540 1.1e-28 129.8 81 72.8
ECA247G3608 Erigeron canadensis HOM05D002364 ORTHO05D002540 1.2e-27 126.3 76 77.6
Sc05g0000640 Simmondsia chinensis HOM05D002364 ORTHO05D002540 1.2e-27 126.3 83 71.1
EL10As5g23478 Beta vulgaris HOM05D002364 ORTHO05D002540 1.5e-27 125.9 81 69.1
Pp3c12_5010 Physcomitrium patens HOM05D002364 ORTHO05D002540 2.0e-27 125.6 93 65.6
Mapoly0012s0162 Marchantia polymorpha HOM05D002364 ORTHO05D002540 9.9e-27 123.2 88 62.5
RcHm_v2.0_Chr7g0209161 Rosa chinensis HOM05D002364 ORTHO05D002540 1.7e-26 122.5 74 74.3
CBR_g30030 Chara braunii HOM05D002364 ORTHO05D002540 2.2e-26 122.1 85 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3215 Anthoceros agrestis HOM05D002364 ORTHO05D002540 7.1e-25 117.1 90 62.2
Nn1g06880 Nelumbo nucifera HOM05D002364 ORTHO05D002540 2.3e-23 112.1 64 76.6
Hma1.2p1_0046F.1_g027640 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 3.9e-23 111.3 50 100.0
SMO117G0140 Selaginella moellendorffii HOM05D002364 ORTHO05D002540 3.9e-23 111.3 77 66.2
Rhsim12G0095200 Rhododendron simsii HOM05D002364 ORTHO05D002540 1.9e-17 92.4 63 69.8
Pp3c4_15920 Physcomitrium patens HOM05D002364 ORTHO05D002540 1.7e-15 85.9 66 57.6
RhsimUnG0084200 Rhododendron simsii HOM05D002364 ORTHO05D338518 5.8e-11 70.9 44 72.7
CBR_g11118 Chara braunii HOM05D002364 ORTHO05D002540 3.8e-10 68.2 89 42.7
Thhalv10003361m.g Eutrema salsugineum HOM05D002364 ORTHO05D002540 2.4e-09 65.5 68 45.6
Gohir.A11G060300 Gossypium hirsutum HOM05D002364 ORTHO05D002540 7.1e-09 63.9 87 39.1
Gohir.D11G064400 Gossypium hirsutum HOM05D002364 ORTHO05D002540 7.1e-09 63.9 87 39.1
Gorai.007G069600 Gossypium raimondii HOM05D002364 ORTHO05D002540 7.1e-09 63.9 87 39.1
Os01g0614700 Oryza sativa ssp. japonica HOM05D002364 ORTHO05D002540 9.3e-09 63.5 89 39.3
Prupe.2G061900 Prunus persica HOM05D002364 ORTHO05D002540 1.6e-08 62.8 89 36.0
Sed0010986 Sechium edule HOM05D002364 ORTHO05D002540 2.7e-08 62.0 89 36.0
HanXRQChr02g0033551 Helianthus annuus HOM05D002364 ORTHO05D002540 3.5e-08 61.6 37 70.3
SGA_v2.0_scaffold201G41363 Striga asiatica HOM05D002364 ORTHO05D002540 3.5e-08 61.6 92 37.0
MD17G1232600 Malus domestica HOM05D002364 ORTHO05D002540 4.6e-08 61.2 86 38.4
ATR0602G063 Amborella trichopoda HOM05D002364 ORTHO05D002540 1.0e-07 60.1 89 37.1
CBR_g11103 Chara braunii HOM05D002364 ORTHO05D002540 1.0e-07 60.1 86 40.7
Nitab4.5_0010797g0040 Nicotiana tabacum HOM05D002364 ORTHO05D002540 1.0e-07 60.1 88 37.5
SEGI_40426 Sequoiadendron giganteum HOM05D002364 ORTHO05D002540 1.7e-07 59.3 86 38.4
TPR.G11609 Trifolium pratense HOM05D002364 ORTHO05D002540 1.7e-07 59.3 90 37.8
MD09G1239500 Malus domestica HOM05D002364 ORTHO05D002540 2.3e-07 58.9 86 37.2
FAN02G4503 Fragaria x ananassa HOM05D002364 ORTHO05D002540 3.0e-07 58.5 86 37.2
FAN09G3060 Fragaria x ananassa HOM05D002364 ORTHO05D002540 3.0e-07 58.5 86 37.2
FAN09G4488 Fragaria x ananassa HOM05D002364 ORTHO05D002540 3.0e-07 58.5 86 37.2
Lalb_Chr14g0367411 Lupinus albus HOM05D002364 ORTHO05D002540 3.0e-07 58.5 89 36.0
Lj3g0014209 Lotus japonicus HOM05D002364 ORTHO05D002540 3.9e-07 58.2 89 37.1
CANSAT64G1759 Cannabis sativa HOM05D002364 ORTHO05D002540 5.1e-07 57.8 86 38.4
Medtr2g091185 Medicago truncatula HOM05D002364 ORTHO05D002540 5.1e-07 57.8 90 36.7
Ca_01461_v3 Cicer arietinum L. HOM05D002364 ORTHO05D002540 6.6e-07 57.4 90 35.6
FvH4_6g27130 Fragaria vesca HOM05D002364 ORTHO05D002540 6.6e-07 57.4 86 36.0
FAN14G0453 Fragaria x ananassa HOM05D002364 ORTHO05D002540 8.7e-07 57.0 86 36.0
CAN.G456.27 Capsicum annuum HOM05D002364 ORTHO05D002540 1.1e-06 56.6 87 36.8
Lalb_Chr22g0356871 Lupinus albus HOM05D002364 ORTHO05D002540 1.1e-06 56.6 86 37.2
Nitab4.5_0003827g0060 Nicotiana tabacum HOM05D002364 ORTHO05D002540 1.1e-06 56.6 92 34.8
Peaxi162Scf00469g00131 Petunia axillaris HOM05D002364 ORTHO05D002540 1.1e-06 56.6 87 36.8
Pp3c15_9330 Physcomitrium patens HOM05D002364 ORTHO05D002540 1.1e-06 56.6 89 34.8
Psat5g275280 Pisum sativum HOM05D002364 ORTHO05D002540 1.5e-06 56.2 86 37.2
Sopen07g027270 Solanum pennellii HOM05D002364 ORTHO05D002540 2.5e-06 55.5 87 35.6
PGSC0003DMG400020428 Solanum tuberosum HOM05D002364 ORTHO05D002540 2.5e-06 55.5 87 35.6
Solyc07g053310.3 Solanum lycopersicum HOM05D002364 ORTHO05D002540 3.3e-06 55.1 87 35.6


User provided reference genes

Program Settings