Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 2.2e-58 228.8 117 100.0
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 7.0e-49 197.2 117 85.5
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 1.0e-47 193.4 117 84.6
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 4.0e-44 181.4 115 80.9
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 2.0e-43 179.1 115 80.0
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 7.5e-43 177.2 117 77.8
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 6.3e-42 174.1 106 83.0
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 6.3e-42 174.1 106 83.0
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 6.3e-42 174.1 106 83.0
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 6.3e-42 174.1 106 83.0
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 6.3e-42 174.1 106 83.0
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 6.3e-42 174.1 106 83.0
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 8.3e-42 173.7 115 78.3
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.8e-41 172.6 109 81.7
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 7.7e-40 167.2 106 80.2
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 1.7e-39 166.0 106 82.1
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 3.8e-39 164.9 108 77.8
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 3.8e-39 164.9 108 77.8
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 1.1e-38 163.3 113 74.3
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 1.9e-38 162.5 107 77.6
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 6.1e-37 157.5 109 77.1
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 6.1e-37 157.5 109 77.1
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 6.1e-37 157.5 109 77.1
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 8.0e-37 157.1 116 71.6
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 1.8e-36 156.0 106 76.4
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 2.0e-35 152.5 112 72.3
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 7.0e-33 144.1 91 80.2
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 9.2e-33 143.7 83 86.7
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 2.0e-32 142.5 83 85.5
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 2.7e-32 142.1 81 87.7
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 7.8e-32 140.6 98 75.5
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 2.3e-31 139.0 84 85.7
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.2e-27 126.7 137 55.5
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 2.2e-26 122.5 158 46.8
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 6.6e-23 110.9 72 77.8
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.9e-22 109.4 68 83.8
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-22 108.6 71 77.5
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 7.3e-22 107.5 69 78.3
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 7.3e-22 107.5 69 78.3
BolSC35t60712H Brassica oleracea HOM05D004182 ORTHO05D007321 7.3e-22 107.5 54 94.4
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 7.3e-22 107.5 54 94.4
arahy.Tifrunner.gnm1.ann1.Y35SJI Arachis hypogaea HOM05D004182 ORTHO05D007321 1.2e-21 106.7 106 57.5
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 1.6e-21 106.3 68 79.4
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 1.6e-21 106.3 68 79.4
Atru.chr6.228 Acer truncatum HOM05D004182 ORTHO05D004271 2.1e-21 105.9 53 94.3
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.1e-21 105.9 68 79.4
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.1e-21 105.9 68 79.4
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.1e-21 105.9 68 79.4
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.1e-21 105.9 68 79.4
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.8e-21 105.5 68 77.9
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 3.6e-21 105.1 68 77.9
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 8.0e-21 104.0 68 76.5
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 1.1e-20 103.6 68 76.5
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.1e-20 103.6 68 76.5
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.1e-20 103.6 68 76.5
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.1e-20 103.6 68 79.4
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.4e-20 103.2 68 77.9
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.4e-20 103.2 68 77.9
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.4e-20 103.2 68 77.9
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 2.3e-20 102.4 68 76.5
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 3.1e-20 102.1 68 76.5
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 4.0e-20 101.7 115 53.9
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.2e-20 101.3 69 78.3
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 3.4e-19 98.6 68 75.0
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 3.4e-19 98.6 68 75.0
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 7.5e-19 97.4 68 75.0
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 9.8e-19 97.1 62 77.4
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 9.8e-19 97.1 84 63.1
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 1.3e-18 96.7 68 70.6
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 1.7e-18 96.3 109 56.9
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 4.9e-18 94.7 68 73.5
Sopen02g009080 Solanum pennellii HOM05D004182 ORTHO05D007321 6.4e-18 94.4 114 51.8
Gohir.A05G323708 Gossypium hirsutum HOM05D004182 ORTHO05D007321 8.3e-18 94.0 49 93.9
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 1.1e-17 93.6 84 60.7
BraSC143t45651Z Brassica rapa HOM05D004182 ORTHO05D007321 1.4e-17 93.2 60 76.7
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.4e-17 93.2 60 78.3
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.4e-17 93.2 60 78.3
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.9e-17 92.8 68 72.1
BraSC58t46465Z Brassica rapa HOM05D004182 ORTHO05D007321 3.2e-17 92.0 61 78.7
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 4.1e-17 91.7 67 73.1
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 7.0e-17 90.9 60 75.0
BraSC59t46543Z Brassica rapa HOM05D004182 ORTHO05D007321 9.2e-17 90.5 64 75.0
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.7e-16 89.0 91 54.9
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 3.5e-16 88.6 56 78.6
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 1.3e-15 86.7 68 67.6
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 1.3e-15 86.7 68 67.6
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 1.3e-15 86.7 68 67.6
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 1.3e-15 86.7 68 67.6
Sopen11g020180 Solanum pennellii HOM05D001966 ORTHO05D010127 1.3e-15 86.7 60 75.0
arahy.Tifrunner.gnm1.ann1.0KS2YP Arachis hypogaea HOM05D004182 ORTHO05D007321 1.7e-15 86.3 48 85.4
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 1.7e-15 86.3 65 70.8
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.3e-15 85.9 69 68.1
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 3.0e-15 85.5 63 74.6
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 5.1e-15 84.7 68 66.2
arahy.Tifrunner.gnm1.ann1.P0IFIP Arachis hypogaea HOM05D004182 ORTHO05D007321 6.6e-15 84.3 49 85.7
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.6e-15 84.3 68 66.2
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 1.5e-14 83.2 63 69.8
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 1.9e-14 82.8 67 71.6
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 2.5e-14 82.4 76 65.8
Sopen09g015240 Solanum pennellii HOM05D000004 ORTHO05D011466 2.5e-14 82.4 46 84.8
VMungo0720G0883 Vigna mungo HOM05D004182 ORTHO05D007321 2.1e-13 79.3 46 87.0
Gorai.007G258700 Gossypium raimondii HOM05D004182 ORTHO05D007321 2.8e-13 79.0 49 81.6
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 3.6e-13 78.6 60 68.3
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 1.1e-12 77.0 55 70.9
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 1.1e-12 77.0 68 63.2
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.4e-12 76.6 68 64.7
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.4e-12 76.6 68 64.7
CAN.G1119.15 Capsicum annuum HOM05D002978 ORTHO05D003339 1.8e-12 76.3 62 64.5
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 2.3e-12 75.9 57 71.9
arahy.Tifrunner.gnm1.ann1.5LAD0A Arachis hypogaea HOM05D004182 ORTHO05D007321 3.1e-12 75.5 70 61.4
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 3.1e-12 75.5 68 61.8
VMungo1127G1475 Vigna mungo HOM05D000959 ORTHO05D000775 3.1e-12 75.5 63 63.5
Gohir.D10G118433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 4.0e-12 75.1 49 73.5
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 5.2e-12 74.7 68 61.8
Gohir.A07G125450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-11 73.6 49 75.5
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 7.5e-11 70.9 106 48.1
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 2.2e-10 69.3 68 60.3
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 8.3e-10 67.4 50 72.0
Nn8g40575 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.9e-09 66.2 48 72.9
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 3.2e-09 65.5 106 46.2
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 3.2e-09 65.5 68 54.4
HPP92_028384 Vanilla planifolia HOM05D004182 ORTHO05D007321 3.2e-09 65.5 49 71.4
HPP92_028405 Vanilla planifolia HOM05D004182 ORTHO05D007321 3.2e-09 65.5 49 71.4
HPP92_028414 Vanilla planifolia HOM05D004182 ORTHO05D007321 3.2e-09 65.5 49 71.4
HPP92_028420 Vanilla planifolia HOM05D004182 ORTHO05D007321 3.2e-09 65.5 49 71.4
HPP92_028429 Vanilla planifolia HOM05D004182 ORTHO05D007321 3.2e-09 65.5 49 71.4
HPP92_028433 Vanilla planifolia HOM05D004182 ORTHO05D007321 3.2e-09 65.5 49 71.4
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.2e-09 63.9 78 52.6
Phvul.003G041600 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.0e-07 60.5 49 65.3
Glyma.01G163400 Glycine max HOM05D004182 ORTHO05D007321 1.3e-07 60.1 49 71.4
Phvul.010G151800 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 5.1e-07 58.2 68 54.4
ECA247G0006 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-06 57.0 70 51.4
Psat3g186560 Pisum sativum HOM05D001387 ORTHO05D001250 2.5e-06 55.8 48 66.7
BcaC05g26432 Brassica carinata HOM05D004182 ORTHO05D007321 7.3e-06 54.3 58 51.7
Migut.I00342 Erythranthe guttata HOM05D004182 ORTHO05D007321 7.3e-06 54.3 38 73.7
CAN.G1185.4 Capsicum annuum HOM05D000964 ORTHO05D003870 9.5e-06 53.9 31 80.6


User provided reference genes

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