Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.5e-144 515.4 255 100.0
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 7.7e-109 397.5 231 83.5
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 8.2e-103 377.5 243 75.3
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.3e-102 374.8 253 75.9
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 5.9e-101 371.3 229 79.9
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.8e-100 368.6 224 79.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.8e-100 368.6 224 79.9
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 5.0e-100 368.2 242 74.8
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-98 363.6 235 73.6
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.3e-97 359.4 222 77.5
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 8.8e-97 357.5 235 72.3
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 3.3e-96 355.5 255 70.2
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 2.4e-94 349.4 227 74.4
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 4.1e-94 348.6 229 72.9
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.5e-93 345.1 222 74.3
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.0e-92 344.0 223 74.4
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-92 343.6 247 68.4
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 2.2e-92 342.8 229 72.5
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.9e-92 342.4 225 74.2
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 5.0e-92 341.7 230 72.2
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 6.5e-92 341.3 225 74.2
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.5e-92 341.3 225 74.2
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 6.5e-92 341.3 222 74.3
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.5e-91 340.1 221 73.8
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.9e-91 339.7 216 75.9
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.5e-91 339.3 218 74.3
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.2e-91 339.0 219 74.4
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 3.2e-91 339.0 218 73.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 3.2e-91 339.0 249 66.7
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.2e-91 337.8 243 68.7
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 9.4e-91 337.4 217 74.7
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.2e-90 337.0 223 71.7
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.2e-90 337.0 250 66.8
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.1e-90 336.3 219 73.5
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.1e-90 336.3 223 72.6
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.6e-90 335.5 243 69.1
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 4.7e-90 335.1 238 68.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.7e-90 335.1 223 71.3
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 4.7e-90 335.1 223 71.3
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.7e-90 335.1 250 66.8
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.1e-90 334.7 223 72.6
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.1e-90 334.7 250 66.8
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.4e-89 333.6 222 72.5
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-89 332.8 217 74.2
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 5.2e-89 331.6 231 69.7
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 6.8e-89 331.3 218 72.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 8.8e-89 330.9 222 70.7
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 8.8e-89 330.9 214 74.3
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.5e-88 330.1 238 67.2
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.6e-88 329.3 234 71.8
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 2.6e-88 329.3 236 67.8
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.4e-88 328.9 249 67.1
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.4e-88 328.9 210 76.7
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 4.4e-88 328.6 229 69.0
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 5.7e-88 328.2 226 70.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 5.7e-88 328.2 232 67.7
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 7.5e-88 327.8 227 70.0
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.3e-87 327.0 222 70.7
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.3e-87 327.0 219 71.7
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.8e-87 325.1 217 72.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 6.3e-87 324.7 216 71.8
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.3e-87 324.7 219 71.2
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 8.3e-87 324.3 212 74.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.1e-86 323.9 222 71.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.1e-86 323.9 228 68.0
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.1e-86 323.9 238 67.6
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.4e-86 323.6 241 66.0
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.8e-86 323.2 221 70.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.8e-86 323.2 212 71.7
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.8e-86 323.2 224 70.1
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 3.1e-86 322.4 225 68.4
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 4.1e-86 322.0 218 71.1
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 7.0e-86 321.2 245 68.2
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.2e-85 320.5 224 70.1
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.6e-85 320.1 224 69.6
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 5.9e-85 318.2 243 63.8
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.9e-85 318.2 213 72.8
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.0e-84 317.4 224 69.6
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.0e-84 317.4 216 71.8
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.3e-84 317.0 214 71.0
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.3e-84 317.0 243 66.7
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.2e-84 316.2 223 68.2
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 8.5e-84 314.3 227 69.6
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.9e-83 313.2 221 67.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 4.2e-83 312.0 219 70.8
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 4.2e-83 312.0 250 64.4
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 4.2e-83 312.0 250 64.4
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 4.2e-83 312.0 250 64.4
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.5e-83 311.6 226 65.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 7.2e-83 311.2 220 69.1
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 9.4e-83 310.8 219 70.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.2e-82 310.5 219 70.8
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.2e-82 310.5 250 63.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.2e-82 310.5 210 69.5
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-82 310.1 250 63.6
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-82 310.1 250 63.6
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-82 309.7 252 63.9
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.1e-82 309.7 252 63.9
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.1e-82 309.7 247 63.6
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 3.6e-82 308.9 250 63.2
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 3.6e-82 308.9 210 69.5
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.7e-82 308.5 231 66.2
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-81 307.4 248 62.9
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.8e-81 306.6 215 69.3
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 2.3e-81 306.2 206 69.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 3.0e-81 305.8 214 69.2
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.2e-81 305.1 217 67.3
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 8.8e-81 304.3 227 64.3
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 8.8e-81 304.3 233 65.7
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 4.4e-80 302.0 238 63.4
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 7.5e-80 301.2 238 65.1
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.7e-79 300.1 238 65.5
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.8e-79 298.5 238 65.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.8e-79 298.5 238 65.1
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 4.8e-79 298.5 235 63.8
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 6.3e-79 298.1 228 65.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-78 297.4 230 65.2
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.4e-78 296.2 214 67.3
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 3.1e-78 295.8 238 64.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.1e-78 295.8 189 77.2
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 5.4e-78 295.0 223 63.7
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-77 293.9 238 64.3
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.0e-77 293.1 214 65.9
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 3.5e-77 292.4 217 67.7
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 4.5e-77 292.0 223 63.2
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.7e-76 290.0 173 80.9
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.7e-76 290.0 214 65.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.0e-76 288.5 232 64.2
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 5.0e-76 288.5 206 67.0
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 9.5e-75 284.3 200 70.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.6e-74 283.5 180 75.0
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.0e-74 281.2 216 63.4
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 7.5e-72 274.6 218 61.0
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.8e-71 272.7 232 58.2
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 3.7e-71 272.3 232 58.2
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 3.7e-71 272.3 232 58.2
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 6.3e-71 271.6 242 58.7
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-70 270.4 232 57.3
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-70 270.4 232 57.3
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-70 270.4 232 57.3
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.8e-70 270.0 204 65.2
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 7.8e-69 264.6 235 57.4
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.6e-66 255.8 200 63.0
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.3e-65 253.1 233 56.2
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 4.6e-61 238.8 199 58.8
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.1e-58 229.9 277 51.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 5.2e-57 225.3 220 54.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-56 223.8 142 75.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.4e-56 222.2 142 74.6
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 7.5e-56 221.5 233 50.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.5e-56 221.5 231 50.2
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.5e-53 212.6 232 49.1
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.6e-53 212.2 135 74.1
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.2e-46 189.5 126 72.2
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 3.5e-45 186.0 227 45.8
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.9e-44 182.6 160 53.8
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-40 170.2 196 52.0
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.7e-28 130.6 95 69.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 2.8e-18 96.7 77 61.0
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.4e-17 93.6 60 68.3
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 9.3e-14 81.6 89 47.2
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.1e-13 80.5 69 55.1
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 3.3e-11 73.2 72 55.6
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 4.3e-11 72.8 68 51.5
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.8e-08 62.4 34 82.4
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.3e-07 61.2 44 70.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 3.8e-07 59.7 76 50.0


User provided reference genes

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