Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 2.1e-100 369.0 180 100.0
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 1.0e-99 366.7 180 98.9
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 8.1e-89 330.5 181 86.2
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 2.1e-84 315.8 178 81.5
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 8.7e-83 310.5 180 80.6
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 4.3e-82 308.1 180 81.1
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 1.1e-80 303.5 180 80.0
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 1.4e-80 303.1 179 78.8
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 9.0e-80 300.4 180 76.7
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 2.6e-79 298.9 180 79.4
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 7.6e-79 297.4 182 78.6
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 1.0e-78 297.0 179 77.1
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 3.8e-78 295.0 179 78.2
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 2.5e-77 292.4 180 75.6
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 5.5e-77 291.2 181 76.2
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 7.1e-77 290.8 180 76.7
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 7.1e-77 290.8 180 75.0
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 7.1e-77 290.8 199 71.9
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 1.2e-76 290.0 180 74.4
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 1.2e-76 290.0 180 75.0
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 1.2e-76 290.0 180 77.2
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 1.2e-76 290.0 180 77.2
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 3.5e-76 288.5 180 75.6
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 3.5e-76 288.5 180 74.4
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 6.0e-76 287.7 180 75.0
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 6.0e-76 287.7 180 75.6
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 1.0e-75 287.0 180 72.8
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.0e-75 287.0 195 70.8
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.0e-75 287.0 195 70.8
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 1.8e-75 286.2 180 74.4
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 2.3e-75 285.8 180 72.8
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 2.3e-75 285.8 180 72.2
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.9e-75 285.0 180 72.8
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 8.7e-75 283.9 180 72.2
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 8.7e-75 283.9 180 74.4
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 1.9e-74 282.7 156 86.5
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 5.7e-74 281.2 180 72.8
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 7.4e-74 280.8 180 72.8
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 9.6e-74 280.4 180 72.2
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 1.6e-73 279.6 180 72.8
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 1.6e-73 279.6 231 61.5
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 2.1e-73 279.3 180 73.3
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 2.8e-73 278.9 180 72.2
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 3.7e-73 278.5 180 73.3
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 4.8e-73 278.1 188 69.7
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 4.8e-73 278.1 179 73.2
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 8.2e-73 277.3 180 72.8
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.1e-72 276.9 180 72.2
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 3.1e-72 275.4 180 71.7
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 5.3e-72 274.6 180 72.2
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 5.3e-72 274.6 180 71.1
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 6.9e-72 274.2 180 72.2
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 9.0e-72 273.9 179 72.6
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 1.2e-71 273.5 180 72.2
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 1.2e-71 273.5 180 71.7
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 1.2e-71 273.5 223 64.1
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 1.5e-71 273.1 180 71.1
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 3.4e-71 271.9 180 71.1
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 3.4e-71 271.9 179 70.4
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 5.9e-71 271.2 179 72.1
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 1.7e-70 269.6 180 68.3
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 1.7e-70 269.6 179 69.8
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 1.7e-70 269.6 180 71.1
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 3.8e-70 268.5 180 70.0
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 3.8e-70 268.5 180 70.0
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 6.5e-70 267.7 180 67.2
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 6.5e-70 267.7 180 71.1
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 1.4e-69 266.5 180 67.8
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 1.4e-69 266.5 180 67.2
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 1.4e-69 266.5 180 70.0
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 1.9e-69 266.2 180 71.1
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 2.5e-69 265.8 180 70.0
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 2.5e-69 265.8 179 68.7
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 2.5e-69 265.8 180 67.2
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 3.2e-69 265.4 182 72.5
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 3.2e-69 265.4 180 70.0
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 4.2e-69 265.0 180 70.0
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 4.2e-69 265.0 180 68.3
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 4.2e-69 265.0 180 70.6
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 1.2e-68 263.5 180 67.2
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 1.2e-68 263.5 180 67.2
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 1.2e-68 263.5 180 67.2
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 1.0e-67 260.4 196 63.8
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 1.8e-67 259.6 207 62.3
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 3.9e-67 258.5 181 66.9
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 6.7e-67 257.7 180 66.7
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 2.5e-66 255.8 180 68.3
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 5.7e-66 254.6 180 71.1
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 2.2e-65 252.7 223 58.3
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 3.1e-64 248.8 179 69.3
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 5.9e-63 244.6 184 66.3
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 3.8e-62 241.9 180 62.2
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 5.0e-62 241.5 160 73.1
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 6.5e-62 241.1 160 70.6
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 1.4e-61 240.0 180 65.0
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 3.2e-61 238.8 179 62.0
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 4.2e-61 238.4 180 64.4
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 1.8e-59 233.0 179 62.0
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 3.3e-58 228.8 160 69.4
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.3e-57 226.9 160 67.5
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 2.2e-57 226.1 159 64.8
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 1.1e-56 223.8 157 65.6
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 2.4e-56 222.6 182 58.8
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 4.5e-55 218.4 181 60.8
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 7.7e-55 217.6 179 57.0
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 5.0e-54 214.9 160 66.2
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.2e-53 211.8 194 57.7
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 3.6e-52 208.8 178 60.1
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 1.0e-51 207.2 137 73.0
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 2.3e-51 206.1 183 57.4
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 3.9e-51 205.3 180 58.3
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 2.6e-50 202.6 131 73.3
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.7e-49 199.9 181 57.5
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 9.1e-48 194.1 160 57.5
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 3.2e-45 185.7 126 68.3
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 2.0e-42 176.4 198 49.5
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 5.3e-40 168.3 121 66.1
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 1.6e-39 166.8 192 43.8
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 5.0e-38 161.8 218 40.8
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 6.5e-38 161.4 135 60.0
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 3.2e-37 159.1 135 59.3
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 4.7e-36 155.2 207 40.6
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 4.0e-35 152.1 179 43.6
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 3.4e-34 149.1 160 52.5
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 8.3e-33 144.4 81 79.0
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 5.7e-26 121.7 99 62.6
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 8.6e-22 107.8 93 59.1
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 1.2e-18 97.4 180 32.8
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 1.5e-18 97.1 130 45.4
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 1.8e-16 90.1 180 31.7
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 3.2e-16 89.4 61 68.9
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 5.9e-15 85.1 73 54.8
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 7.5e-10 68.2 43 69.8
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 7.0e-08 61.6 50 60.0
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 3.5e-07 59.3 44 65.9
Zm00001eb049210 Zea mays HOM05D001870 ORTHO05D001797 1.3e-06 57.4 44 63.6
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 3.0e-06 56.2 31 74.2


User provided reference genes

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