Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 8.7e-43 176.4 80 100.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 8.7e-43 176.4 80 100.0
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.2e-23 112.8 80 65.0
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.9e-21 105.5 67 67.2
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-19 99.8 71 63.4
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-19 99.8 69 63.8
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.4e-19 99.4 74 59.5
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.0e-18 95.5 75 58.7
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 5.7e-18 94.0 66 62.1
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 9.7e-18 93.2 68 52.9
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.7e-17 92.4 68 54.4
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.7e-17 92.4 73 63.0
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.2e-17 92.0 75 52.0
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 2.2e-17 92.0 82 57.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.3e-17 90.5 68 54.4
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.4e-16 89.4 67 56.7
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.2e-15 86.3 80 55.0
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.2e-15 86.3 85 52.9
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.6e-15 85.9 77 49.4
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.6e-15 85.9 68 51.5
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 3.5e-15 84.7 74 52.7
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 3.5e-15 84.7 68 48.5
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 3.5e-15 84.7 67 47.8
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.5e-15 84.3 74 55.4
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.5e-15 84.3 74 55.4
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 4.5e-15 84.3 69 52.2
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.9e-15 84.0 67 47.8
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.9e-15 84.0 74 55.4
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 5.9e-15 84.0 66 51.5
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 7.7e-15 83.6 76 56.6
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 7.7e-15 83.6 83 51.8
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 7.7e-15 83.6 77 50.6
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.0e-14 83.2 77 50.6
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.3e-14 82.8 69 52.2
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.3e-14 82.8 68 55.9
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.7e-14 82.4 80 47.5
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.7e-14 82.4 67 46.3
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 2.2e-14 82.0 67 47.8
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.9e-14 81.6 67 52.2
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 2.9e-14 81.6 67 46.3
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.9e-14 81.6 67 46.3
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.9e-14 81.6 67 46.3
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 2.9e-14 81.6 68 52.9
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 3.8e-14 81.3 67 49.3
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 3.8e-14 81.3 71 53.5
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.5e-14 80.1 77 48.1
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 8.5e-14 80.1 77 48.1
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 8.5e-14 80.1 69 50.7
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.1e-13 79.7 68 51.5
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.1e-13 79.7 68 52.9
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-13 79.3 70 52.9
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.9e-13 79.0 69 50.7
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.5e-13 78.6 54 57.4
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 3.2e-13 78.2 72 51.4
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 3.2e-13 78.2 72 50.0
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 4.2e-13 77.8 67 47.8
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 7.2e-13 77.0 67 47.8
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 9.4e-13 76.6 75 49.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.2e-12 76.3 76 50.0
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 1.2e-12 76.3 65 55.4
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.6e-12 75.9 68 47.1
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.6e-12 75.9 74 44.6
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.1e-12 75.5 70 51.4
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-12 75.1 69 49.3
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-12 75.1 69 49.3
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.7e-12 75.1 96 41.7
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 3.6e-12 74.7 78 48.7
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 6.1e-12 73.9 51 52.9
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 6.1e-12 73.9 70 50.0
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 6.1e-12 73.9 75 48.0
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 8.0e-12 73.6 59 55.9
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.0e-11 73.2 69 44.9
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 1.4e-11 72.8 69 46.4
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 1.4e-11 72.8 52 57.7
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.8e-11 72.4 72 50.0
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.8e-11 72.4 77 48.1
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.8e-11 72.4 39 64.1
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.8e-11 72.4 45 60.0
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.3e-11 72.0 80 42.5
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.0e-11 71.6 80 42.5
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 3.0e-11 71.6 75 45.3
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 4.0e-11 71.2 66 45.5
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 4.0e-11 71.2 66 45.5
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 4.0e-11 71.2 68 47.1
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 4.0e-11 71.2 74 48.6
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 5.2e-11 70.9 68 45.6
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 5.2e-11 70.9 52 48.1
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 5.2e-11 70.9 52 48.1
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 6.7e-11 70.5 77 45.5
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 6.7e-11 70.5 78 44.9
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 8.8e-11 70.1 72 50.0
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 8.8e-11 70.1 73 45.2
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.8e-11 70.1 80 41.2
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 8.8e-11 70.1 67 41.8
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-10 69.7 70 51.4
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-10 69.7 69 52.2
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 2.0e-10 68.9 68 42.6
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 2.0e-10 68.9 55 49.1
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 3.3e-10 68.2 72 44.4
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 3.3e-10 68.2 77 46.8
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 5.7e-10 67.4 52 51.9
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 9.7e-10 66.6 80 41.2
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.3e-09 66.2 77 44.2
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.3e-09 66.2 71 45.1
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 3.7e-09 64.7 69 42.0
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 3.7e-09 64.7 69 42.0
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 4.8e-09 64.3 58 43.1
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 4.8e-09 64.3 49 51.0
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 8.2e-09 63.5 71 47.9
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.4e-08 62.0 65 44.6
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 3.1e-08 61.6 61 45.9
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 4.1e-08 61.2 46 54.3
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 7.0e-08 60.5 38 55.3
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.2e-07 59.7 70 40.0
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 2.7e-07 58.5 76 42.1
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 2.7e-07 58.5 38 52.6
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 3.5e-07 58.2 77 42.9
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 1.3e-06 56.2 75 42.7


User provided reference genes

Program Settings