Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0039F.1_g024580 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 8.5e-23 109.4 52 100.0
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.4e-17 92.0 64 73.4
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.7e-15 85.1 65 64.6
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 3.8e-15 84.0 64 64.1
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 6.5e-15 83.2 64 65.6
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 8.5e-15 82.8 64 60.9
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 8.5e-15 82.8 64 64.1
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.1e-14 82.4 64 62.5
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 1.1e-14 82.4 64 62.5
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 1.1e-14 82.4 64 62.5
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.5e-14 82.0 64 62.5
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 1.5e-14 82.0 64 62.5
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 4.2e-14 80.5 64 60.9
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 4.2e-14 80.5 41 85.4
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 9.4e-14 79.3 64 62.5
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 1.6e-13 78.6 64 60.9
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 2.1e-13 78.2 64 60.9
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.7e-13 77.8 64 59.4
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.7e-13 77.8 41 80.5
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 3.6e-13 77.4 64 62.5
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 4.7e-13 77.0 41 82.9
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 4.7e-13 77.0 64 56.2
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 6.1e-13 76.6 64 59.4
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 6.1e-13 76.6 41 78.0
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 6.1e-13 76.6 41 73.2
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 6.1e-13 76.6 41 73.2
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 6.1e-13 76.6 64 60.9
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 8.0e-13 76.3 41 80.5
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 8.0e-13 76.3 41 80.5
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 8.0e-13 76.3 66 56.1
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 8.0e-13 76.3 64 60.9
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.0e-12 75.9 64 57.8
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 1.0e-12 75.9 64 56.2
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.4e-12 75.5 64 57.8
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 1.8e-12 75.1 64 56.2
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 2.3e-12 74.7 41 75.6
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.3e-12 74.7 64 57.8
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.3e-12 74.7 64 56.2
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 2.3e-12 74.7 64 56.2
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 3.0e-12 74.3 64 56.2
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 3.0e-12 74.3 41 73.2
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 4.0e-12 73.9 64 54.7
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 4.0e-12 73.9 64 54.7
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 4.0e-12 73.9 41 73.2
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 6.8e-12 73.2 41 75.6
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 6.8e-12 73.2 64 59.4
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 6.8e-12 73.2 41 70.7
TPR.G31177 Trifolium pratense HOM05D003115 ORTHO05D003595 6.8e-12 73.2 64 57.8
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 6.8e-12 73.2 64 54.7
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 8.8e-12 72.8 64 54.7
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 8.8e-12 72.8 64 57.8
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 1.2e-11 72.4 64 54.7
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 1.2e-11 72.4 64 56.2
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 1.5e-11 72.0 66 56.1
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 1.5e-11 72.0 65 50.8
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 1.5e-11 72.0 64 53.1
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 2.0e-11 71.6 64 56.2
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.0e-11 71.6 64 56.2
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 2.0e-11 71.6 64 54.7
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 2.6e-11 71.2 64 54.7
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.6e-11 71.2 64 56.2
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.6e-11 71.2 64 56.2
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 2.6e-11 71.2 64 56.2
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 2.6e-11 71.2 42 71.4
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 3.4e-11 70.9 41 73.2
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 4.4e-11 70.5 64 51.6
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 5.7e-11 70.1 64 51.6
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 7.5e-11 69.7 41 65.9
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.3e-10 68.9 50 60.0
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 1.7e-10 68.6 41 61.0
SHI16728 Sapria himalayana HOM05D003115 ORTHO05D003595 1.7e-10 68.6 46 58.7
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.7e-10 68.6 41 70.7
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 2.2e-10 68.2 41 63.4
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 2.8e-10 67.8 64 50.0
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 3.7e-10 67.4 64 54.7
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 4.8e-10 67.0 64 53.1
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 6.3e-10 66.6 41 65.9
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 6.3e-10 66.6 64 56.2
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 1.4e-09 65.5 41 70.7
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 1.4e-09 65.5 41 65.9
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 1.4e-09 65.5 66 50.0
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.1e-09 63.9 66 48.5
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 7.0e-09 63.2 44 68.2
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 9.1e-09 62.8 64 46.9
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 9.1e-09 62.8 41 63.4
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 9.1e-09 62.8 42 61.9
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 1.2e-08 62.4 41 65.9
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.2e-08 62.4 41 58.5
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.6e-08 62.0 41 58.5
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 2.0e-08 61.6 41 58.5
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.7e-08 61.2 41 61.0
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.5e-08 60.8 67 50.7
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 3.5e-08 60.8 41 58.5
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 5.9e-08 60.1 41 58.5
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.0e-07 59.3 65 47.7
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.2e-07 58.2 66 50.0
Lj6A385T56 Lonicera japonica HOM05D003115 ORTHO05D003595 3.8e-07 57.4 33 75.8
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 3.8e-07 57.4 65 50.8
C05p24030 Brassica napus HOM05D003115 ORTHO05D019968 8.5e-07 56.2 54 48.1
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.5e-06 55.5 65 44.6
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 1.5e-06 55.5 65 44.6
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 1.5e-06 55.5 65 44.6
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 1.5e-06 55.5 65 44.6
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 1.5e-06 55.5 65 44.6
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 1.9e-06 55.1 65 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 3.2e-06 54.3 41 51.2


User provided reference genes

Program Settings