Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.8e-232 808.9 405 100.0
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.6e-183 645.6 322 100.0
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 1.4e-160 570.1 399 71.9
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 4.9e-158 561.6 397 71.0
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 1.6e-156 556.6 398 71.1
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 1.1e-154 550.4 399 70.4
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 3.1e-152 542.3 397 69.5
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 9.5e-146 520.8 395 63.3
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 8.1e-145 517.7 395 65.1
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 3.4e-143 512.3 392 66.3
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 1.7e-142 510.0 398 64.6
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 7.8e-140 501.1 396 63.4
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 7.8e-140 501.1 400 64.0
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 7.8e-140 501.1 400 64.0
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 2.3e-139 499.6 397 64.7
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 1.9e-138 496.5 395 65.1
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 1.6e-137 493.4 400 61.0
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 2.1e-137 493.0 399 61.9
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 2.8e-137 492.7 398 63.8
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 2.8e-137 492.7 395 63.5
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 2.8e-137 492.7 400 64.5
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 6.2e-137 491.5 398 62.1
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 1.8e-136 490.0 401 61.6
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 3.1e-136 489.2 414 61.1
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 2.0e-135 486.5 398 62.3
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 5.8e-135 485.0 390 63.3
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 2.2e-134 483.0 403 58.8
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 2.2e-134 483.0 398 61.3
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 1.9e-133 479.9 398 58.5
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 2.4e-133 479.6 397 61.0
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 9.3e-133 477.6 394 60.7
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 1.2e-132 477.2 397 59.4
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 3.5e-132 475.7 391 62.4
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 7.8e-132 474.6 400 60.2
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 2.3e-131 473.0 392 61.2
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 6.6e-131 471.5 408 60.3
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 6.6e-131 471.5 396 60.6
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 1.5e-130 470.3 394 61.7
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 1.9e-130 469.9 391 58.8
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 4.3e-130 468.8 394 59.9
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 4.3e-130 468.8 399 58.6
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 5.6e-130 468.4 396 60.4
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 4.8e-129 465.3 400 57.0
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 8.1e-129 464.5 398 60.1
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 2.0e-127 459.9 407 56.3
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 1.7e-126 456.8 396 58.8
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 2.9e-126 456.1 392 59.7
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 6.4e-126 454.9 335 67.2
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 8.4e-126 454.5 396 58.6
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 1.4e-125 453.8 398 59.5
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 7.9e-124 448.0 396 58.8
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 1.8e-123 446.8 388 59.3
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 2.3e-123 446.4 403 58.3
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 3.9e-123 445.7 366 63.1
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 3.7e-121 439.1 390 55.9
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 3.7e-121 439.1 399 58.4
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 3.7e-121 439.1 393 59.5
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 8.1e-121 438.0 403 56.8
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 1.1e-120 437.6 384 58.6
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 5.3e-120 435.3 266 80.8
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 9.0e-120 434.5 398 57.3
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 5.8e-119 431.8 357 58.8
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 7.6e-119 431.4 399 57.6
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 7.6e-119 431.4 397 55.9
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 1.3e-118 430.6 399 57.6
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 2.9e-118 429.5 341 58.7
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 3.8e-118 429.1 398 58.3
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 4.9e-118 428.7 398 56.5
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 6.4e-118 428.3 398 57.5
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 1.9e-117 426.8 398 56.8
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 2.4e-117 426.4 403 56.3
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 4.6e-116 422.2 372 59.4
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 6.0e-116 421.8 391 57.5
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 6.0e-116 421.8 397 55.9
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 3.0e-115 419.5 399 56.6
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 3.9e-115 419.1 422 51.9
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 1.5e-114 417.2 397 56.7
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 5.6e-114 415.2 339 63.4
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 1.3e-113 414.1 396 56.6
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 3.0e-107 392.9 390 54.4
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 8.7e-107 391.3 317 58.0
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 1.9e-106 390.2 349 58.2
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 4.3e-106 389.0 399 53.6
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 1.1e-104 384.4 350 58.0
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 2.2e-102 376.7 292 64.7
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 4.1e-96 355.9 321 59.2
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 3.4e-95 352.8 285 58.9
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 4.2e-93 345.9 302 58.6
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 2.0e-90 337.0 314 56.7
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 3.3e-90 336.3 268 64.2
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 9.7e-90 334.7 290 55.9
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 4.5e-79 299.3 241 61.8
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 3.0e-75 286.6 395 43.0
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 5.3e-72 275.8 380 42.4
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 8.9e-59 231.9 215 54.4
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 4.9e-57 226.1 242 52.5
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 6.3e-57 225.7 236 54.7
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 5.0e-54 216.1 214 50.9
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 9.5e-53 211.8 286 40.9
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 2.9e-49 200.3 396 35.6
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 6.0e-47 192.6 202 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-44 184.9 285 40.0
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 4.3e-37 159.8 236 41.5
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 9.5e-37 158.7 346 31.5
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 2.1e-28 131.0 104 70.2
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 4.2e-24 116.7 134 46.3
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 7.8e-23 112.5 89 58.4
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 7.3e-13 79.3 101 39.6
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 3.1e-11 73.9 102 42.2
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 4.0e-11 73.6 94 43.6
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 1.7e-09 68.2 70 45.7
Medtr0152s0050 Medicago truncatula HOM05D007013 ORTHO05D008999 1.1e-08 65.5 70 41.4


User provided reference genes

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