Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.2e-288 995.7 495 100.0
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 6.2e-280 966.8 480 99.8
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.7e-253 879.0 485 89.3
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.9e-237 825.1 489 85.1
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 2.5e-233 812.0 480 83.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 3.7e-232 808.1 435 89.4
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.1e-231 806.6 451 87.6
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.5e-230 802.7 481 83.2
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.5e-230 802.7 471 84.3
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 2.0e-230 802.4 465 84.5
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 2.0e-230 802.4 481 84.8
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 7.6e-230 800.4 488 82.2
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.3e-229 799.7 439 87.7
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 8.4e-229 797.0 485 82.9
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.1e-228 796.6 507 79.9
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.1e-228 796.6 435 87.6
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.5e-228 795.4 481 82.3
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 3.2e-228 795.0 439 87.5
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 5.5e-228 794.3 481 82.5
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 1.6e-227 792.7 481 82.1
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 3.5e-227 791.6 465 83.0
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 4.6e-227 791.2 489 82.0
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 4.6e-227 791.2 495 81.8
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 6.0e-227 790.8 441 87.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 7.9e-227 790.4 484 81.2
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.0e-226 790.0 467 82.9
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 1.3e-226 789.6 435 88.3
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 3.0e-226 788.5 481 81.3
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.0e-226 788.5 447 85.0
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 3.9e-226 788.1 465 83.0
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 5.1e-226 787.7 481 81.9
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 8.7e-226 786.9 483 81.6
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.5e-225 786.2 481 81.7
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.5e-225 786.2 481 81.7
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 2.5e-225 785.4 483 81.0
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 4.3e-225 784.6 479 81.8
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 9.6e-225 783.5 435 85.5
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.3e-224 783.1 481 81.3
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.8e-224 781.9 463 82.7
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 4.8e-224 781.2 474 81.4
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 8.2e-224 780.4 434 86.4
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.1e-223 778.5 435 84.8
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.0e-223 776.9 475 80.8
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 2.6e-222 775.4 482 79.3
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 7.6e-222 773.9 453 83.7
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.0e-221 773.5 474 80.2
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.3e-221 773.1 475 80.2
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 1.7e-221 772.7 452 83.2
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 2.9e-221 771.9 466 81.8
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 3.8e-221 771.5 466 81.5
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 5.0e-221 771.2 486 78.4
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.0e-221 771.2 458 83.6
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 5.0e-221 771.2 463 81.0
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 6.5e-221 770.8 481 78.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.4e-220 769.6 481 79.4
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 2.5e-220 768.8 481 80.0
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 5.5e-220 767.7 467 80.5
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 7.2e-220 767.3 484 78.1
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.2e-219 766.5 454 82.6
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.7e-219 765.4 472 81.1
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 3.6e-219 765.0 474 80.2
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 4.6e-219 764.6 482 80.5
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 4.6e-219 764.6 487 77.8
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.1e-219 764.2 480 79.4
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 7.9e-219 763.8 447 83.7
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.0e-218 763.5 485 77.1
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-218 763.1 478 81.0
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 6.7e-218 760.8 473 82.0
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 6.7e-218 760.8 480 79.2
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 8.7e-218 760.4 478 78.0
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 1.5e-217 759.6 483 78.3
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 7.4e-217 757.3 467 79.0
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 7.4e-217 757.3 470 78.9
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.6e-216 756.1 480 78.5
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.1e-215 753.4 482 77.2
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.8e-215 752.7 469 78.7
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 5.3e-215 751.1 504 75.8
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 9.1e-215 750.4 477 78.2
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.5e-214 749.6 477 78.2
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.6e-214 748.8 426 85.4
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 4.5e-214 748.0 481 78.0
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 5.9e-214 747.7 479 78.1
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 7.2e-212 740.7 489 75.3
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 3.0e-210 735.3 430 82.8
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.4e-207 726.5 485 77.1
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 1.8e-207 726.1 510 73.3
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 4.5e-206 721.5 481 75.3
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.2e-205 719.2 526 71.9
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.9e-204 716.1 437 78.0
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.5e-204 715.7 483 74.5
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.2e-204 714.9 437 78.5
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 6.7e-202 707.6 480 75.6
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.8e-200 701.4 480 75.0
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.1e-199 698.4 468 76.5
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.7e-197 693.0 492 73.2
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.9e-196 689.5 395 84.3
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.3e-194 682.6 478 72.4
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 5.2e-194 681.4 447 77.0
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 8.8e-194 680.6 447 76.7
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.5e-193 679.9 370 87.8
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 3.3e-193 678.7 433 76.0
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 5.5e-188 661.4 465 73.1
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 7.2e-188 661.0 443 72.5
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.1e-187 659.4 473 72.3
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 9.5e-180 634.0 468 66.5
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 6.8e-178 627.9 443 72.2
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 4.4e-177 625.2 432 70.4
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 5.4e-175 618.2 449 67.0
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 9.2e-175 617.5 423 70.7
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.2e-166 590.5 478 64.9
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 6.8e-162 574.7 427 69.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.4e-154 550.4 450 63.1
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 3.3e-148 529.3 468 57.1
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.4e-138 497.3 291 81.4
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.3e-120 437.6 436 53.0
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 2.3e-117 426.8 401 54.1
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.3e-112 411.0 232 85.8
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 2.7e-110 403.3 301 69.1
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 3.5e-110 402.9 444 52.0
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 7.4e-108 395.2 247 80.2
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 5.9e-97 359.0 251 73.7
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.4e-95 354.4 188 87.2
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 8.2e-91 338.6 447 43.4
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.9e-79 300.8 411 47.7
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 6.3e-75 285.8 208 69.2
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 3.8e-72 276.6 148 87.8
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.1e-58 231.9 198 59.6
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 6.8e-45 186.0 112 82.1
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 4.3e-39 166.8 101 81.2
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 6.2e-38 162.9 118 65.3
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.3e-19 102.1 57 80.7
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 3.3e-15 87.4 43 88.4
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 4.3e-15 87.0 141 41.8
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 8.1e-14 82.8 126 42.9
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 5.3e-13 80.1 107 46.7
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.2e-12 79.0 53 71.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 3.4e-12 77.4 46 69.6
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 4.9e-11 73.6 42 81.0
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 3.5e-09 67.4 171 29.2
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 1.8e-08 65.1 35 80.0
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 3.0e-08 64.3 57 59.6
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 5.1e-08 63.5 168 34.5
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 4.3e-07 60.5 88 48.9
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 1.3e-06 58.9 112 37.5


User provided reference genes

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