Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 2.7e-174 615.1 299 100.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 4.7e-126 454.9 298 74.5
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 7.6e-124 447.6 284 77.8
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 1.3e-123 446.8 270 79.3
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 6.0e-121 438.0 301 73.1
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 3.3e-119 432.2 299 69.2
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.6e-118 429.9 278 74.5
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.8e-118 428.3 286 73.8
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.1e-117 427.2 301 68.1
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.8e-117 426.4 300 70.3
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 6.9e-117 424.5 286 72.4
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.5e-116 423.3 286 72.7
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 7.6e-116 421.0 283 71.0
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 9.9e-116 420.6 267 76.0
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 1.7e-115 419.9 298 69.8
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.7e-115 419.9 298 70.5
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 4.9e-115 418.3 300 70.0
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 6.4e-115 417.9 300 68.7
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 3.2e-114 415.6 292 70.5
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.2e-114 415.2 301 66.4
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 4.2e-114 415.2 292 70.5
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.2e-113 413.7 291 70.1
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 2.7e-113 412.5 260 75.4
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 3.5e-113 412.1 244 79.5
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 4.6e-113 411.8 279 72.0
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.0e-112 410.6 289 70.9
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.3e-112 410.2 304 68.1
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 5.1e-112 408.3 288 70.1
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 8.7e-112 407.5 287 69.0
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 2.1e-110 402.9 266 72.2
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 3.7e-110 402.1 277 70.4
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 3.7e-110 402.1 286 69.2
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 3.7e-110 402.1 280 68.9
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 6.2e-110 401.4 295 68.1
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 3.1e-109 399.1 300 66.3
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 3.1e-109 399.1 280 68.2
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.0e-108 396.4 292 65.4
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 3.4e-108 395.6 272 71.0
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 5.8e-108 394.8 273 71.1
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 7.6e-108 394.4 280 68.6
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.3e-107 393.7 226 81.9
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 3.2e-106 389.0 280 67.1
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 4.2e-106 388.7 246 77.2
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.6e-105 386.7 301 66.1
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.6e-105 386.7 296 63.9
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 3.5e-105 385.6 310 61.9
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 3.5e-105 385.6 235 76.6
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 7.9e-105 384.4 246 73.2
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.3e-104 383.6 216 84.3
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.3e-104 383.6 281 67.6
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.3e-104 382.9 250 72.4
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 3.0e-104 382.5 275 66.9
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 1.9e-103 379.8 256 71.1
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 2.5e-103 379.4 231 74.9
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 4.3e-103 378.6 257 70.0
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 4.3e-103 378.6 251 71.3
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 7.4e-103 377.9 253 73.1
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.3e-102 377.1 308 63.6
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 2.8e-102 375.9 241 73.0
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.8e-101 373.2 233 76.4
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 4.0e-101 372.1 247 72.9
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 1.2e-100 370.5 244 72.1
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 5.8e-100 368.2 250 71.2
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 7.6e-100 367.9 250 70.4
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 7.6e-100 367.9 242 71.9
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.7e-99 366.7 216 78.7
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 8.4e-99 364.4 232 74.6
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 8.4e-99 364.4 302 63.9
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 1.1e-98 364.0 280 65.4
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.1e-98 364.0 235 72.8
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.1e-98 364.0 219 75.3
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 2.5e-98 362.8 232 73.3
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 1.2e-97 360.5 233 72.5
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.2e-97 360.5 257 67.3
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.6e-97 360.1 323 60.4
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 2.1e-97 359.8 227 73.1
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.0e-96 357.5 232 71.6
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.0e-96 357.5 222 73.4
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.8e-96 356.7 237 70.5
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.8e-96 356.7 237 70.5
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.8e-96 356.7 237 70.5
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.0e-96 355.9 221 76.5
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 3.9e-96 355.5 229 71.2
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 2.8e-94 349.4 234 70.5
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 6.9e-93 344.7 265 64.5
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 1.1e-90 337.4 220 70.0
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 2.1e-89 333.2 226 72.1
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.1e-87 327.4 233 68.7
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 9.7e-87 324.3 225 66.7
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.7e-86 323.6 192 77.1
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 2.8e-86 322.8 280 61.1
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.2e-84 317.4 174 83.9
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 3.4e-84 315.8 281 58.4
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 1.7e-83 313.5 242 65.7
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 3.8e-83 312.4 186 77.4
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 9.7e-79 297.7 174 78.7
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.3e-78 297.4 199 70.4
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 2.2e-78 296.6 201 70.6
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.4e-77 293.9 173 78.6
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.7e-75 287.0 218 61.0
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.2e-68 264.2 165 77.0
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 2.1e-65 253.4 164 75.6
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 8.3e-54 214.9 221 46.2
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.1e-53 213.0 133 75.2
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.1e-53 212.6 133 75.2
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.6e-52 210.7 165 66.1
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 2.7e-52 209.9 221 45.2
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 3.8e-51 206.1 170 59.4
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 8.6e-51 204.9 150 66.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 1.9e-50 203.8 236 44.5
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 2.6e-47 193.4 224 48.2
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 9.8e-47 191.4 123 75.6
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 3.6e-41 172.9 219 42.5
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 9.8e-39 164.9 97 78.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 9.8e-39 164.9 97 78.4
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 4.6e-36 156.0 106 68.9
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 3.4e-31 139.8 119 60.5
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.9e-30 136.7 131 58.8
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.9e-30 136.7 131 58.8
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.6e-25 119.8 79 72.2
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 2.3e-24 117.1 156 46.8
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 3.2e-21 106.7 61 77.0
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.5e-18 97.8 56 80.4
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 2.1e-17 94.0 132 44.7
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.5e-15 87.8 50 80.0
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 1.4e-13 81.3 105 48.6
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.4e-13 81.3 122 43.4
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 1.4e-13 81.3 105 48.6
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 4.6e-12 76.3 92 46.7
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 6.2e-09 65.9 48 60.4
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 2.6e-07 60.5 36 77.8
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 3.8e-06 56.6 35 71.4
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 8.4e-06 55.5 177 28.2


User provided reference genes

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