Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.6e-164 582.0 298 100.0
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.6e-164 582.0 298 100.0
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 7.3e-119 431.0 302 73.5
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 7.8e-113 411.0 296 70.6
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 1.7e-112 409.8 296 72.3
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 5.1e-112 408.3 296 69.9
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 5.3e-109 398.3 303 64.7
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 5.3e-109 398.3 296 67.9
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 2.0e-108 396.4 297 69.0
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 3.4e-108 395.6 301 65.8
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 9.9e-108 394.0 302 65.6
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 3.8e-107 392.1 298 67.8
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 6.4e-107 391.3 298 67.1
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.9e-106 389.8 297 67.0
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 4.2e-106 388.7 302 66.2
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 2.7e-105 386.0 298 65.1
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 4.6e-105 385.2 298 65.4
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 1.3e-104 383.6 298 65.1
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 1.7e-104 383.3 314 65.0
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 8.7e-104 380.9 298 65.1
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 3.3e-103 379.0 300 65.3
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 1.3e-102 377.1 295 65.4
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 1.6e-102 376.7 292 65.8
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 6.2e-102 374.8 288 64.6
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 1.4e-101 373.6 299 64.2
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 3.1e-101 372.5 297 64.3
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 4.2e-98 362.1 297 64.6
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 7.9e-97 357.8 302 62.3
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 2.3e-96 356.3 302 61.6
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 3.9e-96 355.5 302 61.6
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 1.5e-95 353.6 301 62.5
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 9.6e-95 350.9 299 61.2
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.3e-94 350.5 299 60.9
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 2.1e-94 349.7 300 60.3
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 2.1e-94 349.7 299 60.5
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 2.1e-94 349.7 287 64.5
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 3.7e-94 349.0 299 61.5
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 3.7e-94 349.0 299 61.5
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 1.8e-93 346.7 296 59.5
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 3.1e-93 345.9 297 59.9
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 6.9e-93 344.7 308 61.4
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 9.0e-93 344.4 298 60.4
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 1.5e-92 343.6 295 59.3
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 1.5e-92 343.6 301 60.1
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 2.6e-92 342.8 302 59.3
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 2.6e-92 342.8 296 61.8
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 3.4e-92 342.4 299 60.2
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 4.5e-92 342.0 304 58.6
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.0e-91 340.9 300 61.0
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.0e-91 340.9 303 57.8
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 1.3e-91 340.5 294 59.5
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 1.3e-91 340.5 295 59.7
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 3.8e-91 339.0 294 59.2
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 4.9e-91 338.6 305 59.0
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 6.5e-91 338.2 299 58.2
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 1.1e-90 337.4 303 57.4
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 6.0e-89 331.6 284 59.9
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 1.3e-88 330.5 305 57.7
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 3.0e-88 329.3 290 56.6
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 3.9e-88 328.9 284 55.3
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 6.7e-88 328.2 290 60.3
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 8.7e-88 327.8 295 58.6
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 8.7e-88 327.8 295 58.3
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 1.1e-87 327.4 302 60.6
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 1.5e-87 327.0 297 59.6
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 9.6e-87 324.3 297 55.9
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 1.3e-86 323.9 302 57.0
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.6e-86 323.6 299 57.2
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 2.1e-86 323.2 288 55.2
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 2.1e-86 323.2 312 57.4
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 2.8e-86 322.8 295 54.9
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 4.8e-86 322.0 297 55.6
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 1.8e-85 320.1 285 54.0
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 1.8e-85 320.1 295 56.3
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 6.9e-85 318.2 282 54.3
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 1.5e-84 317.0 283 54.4
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 2.0e-84 316.6 283 56.5
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 2.6e-84 316.2 284 55.6
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 7.6e-84 314.7 291 56.0
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 2.9e-83 312.8 302 57.9
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 8.4e-83 311.2 302 53.0
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 2.5e-82 309.7 297 53.9
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 4.2e-82 308.9 284 54.2
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 9.3e-82 307.8 289 54.3
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 1.2e-81 307.4 298 58.4
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 6.1e-81 305.1 276 59.8
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 6.1e-81 305.1 280 56.8
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 1.3e-80 303.9 292 54.1
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 1.3e-80 303.9 292 54.1
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 1.5e-79 300.4 293 53.2
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 9.7e-79 297.7 294 52.7
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 9.7e-79 297.7 298 53.0
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.9e-77 291.6 299 52.5
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 5.9e-76 288.5 301 49.8
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 1.7e-70 270.4 463 37.4
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 3.4e-68 262.7 295 50.2
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 1.7e-67 260.4 295 48.1
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 5.7e-63 245.4 301 44.9
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 1.7e-62 243.8 171 69.0
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 4.8e-62 242.3 225 58.2
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 3.5e-60 236.1 168 67.9
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.7e-59 233.8 306 43.8
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 1.1e-58 231.1 170 68.2
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.7e-57 225.7 291 45.7
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 5.2e-48 195.7 171 58.5
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 4.1e-45 186.0 305 37.4
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 2.2e-43 180.3 156 59.6
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 5.0e-43 179.1 160 56.2
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.7e-38 164.1 295 33.2
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 2.7e-36 156.8 130 65.4
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 5.0e-35 152.5 152 55.3
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 1.0e-32 144.8 247 36.0
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 4.0e-32 142.9 128 57.0
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.3e-30 137.9 278 30.2
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 3.5e-28 129.8 247 33.6
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.3e-24 117.1 142 43.7
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-22 110.9 137 43.8
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 1.3e-19 101.3 62 75.8
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 1.9e-18 97.4 73 67.1
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 1.1e-16 91.7 63 65.1
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.5e-15 85.5 114 43.0
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.1e-13 81.6 114 41.2
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-13 80.9 114 41.2
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.1e-13 79.0 114 40.4
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.1e-13 79.0 114 40.4
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 1.2e-12 78.2 157 30.6
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-11 74.3 124 37.9
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.2e-08 62.8 56 51.8
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.8e-08 62.4 55 54.5
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-06 57.8 56 50.0
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.2e-06 57.4 56 50.0
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.8e-06 56.6 56 48.2
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.4e-06 55.8 56 48.2


User provided reference genes

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