Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1964.9 983 100.0
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1946.0 997 98.2
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1365.1 949 72.9
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1338.9 1009 68.0
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1318.1 1009 67.7
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1263.4 1037 63.5
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1258.0 1017 63.8
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1203.7 1023 61.0
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1169.1 993 60.8
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1167.9 1012 58.8
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1165.6 1027 60.2
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1162.9 1001 60.7
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1161.4 1013 60.3
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1148.7 1019 59.6
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1144.4 1008 59.2
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1141.3 1006 59.5
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1140.9 1010 59.9
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1138.6 1021 58.2
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1136.7 1041 58.7
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1129.8 999 59.9
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1111.3 1010 58.2
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1110.5 1010 58.3
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1110.1 1008 58.4
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1109.7 1021 57.8
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1099.3 1014 57.8
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1091.6 925 61.2
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 1.3e-310 1069.7 1005 56.5
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 3.0e-310 1068.5 1029 54.7
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 1.8e-307 1059.3 1018 54.7
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 1.8e-307 1059.3 1012 56.5
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 1.2e-306 1056.6 1012 54.7
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 2.0e-306 1055.8 1013 55.9
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 7.6e-306 1053.9 1000 55.8
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 9.9e-306 1053.5 1000 55.8
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 9.9e-306 1053.5 1000 55.6
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 1.1e-304 1050.0 1003 56.0
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.8e-302 1042.7 1000 55.0
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 1.8e-302 1042.7 1017 54.1
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 8.7e-302 1040.4 1022 54.3
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 1.9e-301 1039.3 1002 54.6
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 2.5e-301 1038.9 1003 55.1
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 2.5e-301 1038.9 1009 54.7
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 2.8e-300 1035.4 1021 55.2
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 3.1e-299 1031.9 1011 55.6
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 2.6e-298 1028.9 1011 52.8
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 1.3e-297 1026.5 1012 55.8
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 3.8e-297 1025.0 1021 54.5
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 2.5e-296 1022.3 1020 53.7
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 6.0e-295 1017.7 1008 54.7
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 1.8e-294 1016.1 1008 53.7
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 3.9e-294 1015.0 995 54.3
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.9e-293 1012.7 1013 53.7
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 3.3e-293 1011.9 1009 53.4
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 5.6e-293 1011.1 1002 54.1
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 1.3e-292 1010.0 1003 54.3
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 3.7e-292 1008.4 1016 52.8
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 5.3e-291 1004.6 1009 53.7
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 1.5e-290 1003.0 1012 52.7
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 1.9e-288 996.1 1007 53.7
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 6.0e-287 991.1 1003 52.5
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 1.8e-286 989.6 1007 53.3
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 3.0e-286 988.8 1002 53.7
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 2.2e-284 982.6 1018 52.9
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 4.8e-284 981.5 1009 52.0
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 1.8e-283 979.5 1011 53.0
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 6.9e-283 977.6 1034 52.3
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 6.9e-283 977.6 1018 50.7
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 2.6e-282 975.7 1021 52.5
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 2.5e-277 959.1 1020 51.1
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 2.5e-277 959.1 1011 52.5
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 1.1e-272 943.7 1003 50.5
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 3.2e-272 942.2 994 52.6
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 1.0e-265 920.6 1019 50.0
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 1.3e-265 920.2 1005 50.9
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 4.7e-263 911.8 1016 49.8
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 3.7e-260 902.1 1009 50.6
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 2.1e-255 886.3 1010 48.4
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 4.0e-254 882.1 1072 47.0
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 3.7e-252 875.5 999 49.2
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 6.3e-252 874.8 1003 49.0
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 4.1e-251 872.1 1011 48.6
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 9.1e-251 870.9 997 49.2
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 4.7e-247 858.6 1008 49.0
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 1.8e-243 846.7 1008 47.7
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 5.9e-242 841.6 996 48.3
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 8.6e-241 837.8 985 48.2
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 2.5e-240 836.3 985 48.1
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 2.1e-239 833.2 985 48.3
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 2.1e-239 833.2 1010 45.0
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.9e-238 827.8 1045 44.3
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 4.0e-230 802.4 758 54.0
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 1.5e-229 800.4 1015 45.6
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 3.4e-229 799.3 695 61.3
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 5.8e-221 771.9 1000 44.5
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.9e-216 756.9 752 52.8
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 1.0e-201 708.0 988 42.7
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.6e-181 640.2 762 46.7
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 2.2e-151 540.8 1027 35.1
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 6.3e-135 486.1 1038 31.9
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 2.2e-132 477.6 1089 33.5
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 2.6e-120 437.6 430 54.0
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 2.0e-112 411.4 549 45.0
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 4.3e-107 393.7 975 31.1
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 4.9e-103 380.2 504 40.1
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 5.4e-102 376.7 475 46.5
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 3.5e-101 374.0 908 28.7
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 6.0e-101 373.2 427 48.7
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 7.3e-91 339.7 546 37.2
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 1.4e-78 298.9 480 39.0
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 1.4e-78 298.9 375 44.5
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.9e-75 288.5 356 48.3
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.3e-68 265.0 193 69.9
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.1e-65 256.1 235 54.5
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 2.9e-63 248.1 358 42.7
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.3e-52 211.8 124 81.5
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 3.3e-43 181.4 257 44.4
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 1.8e-41 175.6 161 54.7
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 7.2e-30 137.1 96 68.8
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 2.7e-29 135.2 710 24.6
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.0e-28 133.3 123 56.1
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.6e-27 128.6 160 43.1
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 2.9e-23 115.2 151 46.4
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 1.1e-22 113.2 83 66.3
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 1.2e-13 83.2 634 22.9
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 4.7e-13 81.3 108 40.7
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 2.2e-10 72.4 55 60.0
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.2e-10 72.4 138 37.7
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 9.2e-09 67.0 87 42.5
Medtr2g060600 Medicago truncatula HOM05D004423 ORTHO05D005464 1.2e-08 66.6 88 39.8
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 5.0e-07 61.2 57 56.1
Medtr2g060565 Medicago truncatula HOM05D004423 ORTHO05D005464 5.0e-07 61.2 54 50.0
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 1.9e-06 59.3 107 35.5
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.3e-06 58.2 111 31.5


User provided reference genes

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