Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 3046.5 1586 100.0
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1947.9 997 98.2
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1917.1 1620 63.0
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1899.4 1624 62.7
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1848.2 1291 73.0
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1801.9 1645 59.3
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1789.2 1666 58.5
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1692.9 1643 56.5
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1685.6 1613 57.2
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1650.6 1732 53.6
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1650.2 1677 55.4
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1647.5 1641 55.2
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1635.2 1626 54.7
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1633.6 1624 54.9
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1629.4 1665 53.5
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1628.6 1625 54.8
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1606.3 1635 53.4
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1603.2 1636 53.9
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1600.1 1610 55.0
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1599.3 1636 53.3
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1585.5 1643 54.4
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1558.9 1627 53.7
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1542.3 1609 53.8
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1537.3 1602 52.9
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1526.5 1345 59.4
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1520.8 1245 63.1
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1518.1 1640 52.1
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1504.6 1636 51.1
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1502.3 1616 52.0
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1502.3 1619 52.1
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1496.5 1638 52.3
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1491.5 1635 52.1
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1486.9 1601 52.7
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1486.1 1637 50.9
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1477.2 1609 51.8
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1477.2 1610 51.6
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1476.5 1643 50.5
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1474.1 1609 51.8
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1470.7 1621 50.0
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1466.8 1621 51.4
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1466.8 1640 49.0
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1465.3 1611 50.9
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1464.1 1639 49.8
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1456.4 1609 50.0
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1454.5 1595 50.7
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1453.7 1609 50.6
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1453.0 1593 50.7
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1447.2 1635 49.7
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1446.4 1621 50.1
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1444.5 1616 50.1
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1443.3 1572 51.7
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1438.7 1632 50.3
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1433.3 1614 50.3
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1427.5 1592 50.8
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1414.1 1390 55.9
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1414.1 1658 49.6
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1414.1 1625 48.6
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1408.7 1644 49.2
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1407.1 1617 49.4
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1406.7 1619 49.7
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1404.0 1661 48.2
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1399.0 1572 49.7
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1394.4 1549 50.2
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1387.9 1620 49.0
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1385.5 1354 55.4
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1378.2 1804 45.6
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1347.8 1598 48.6
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1345.9 1505 51.2
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1341.6 1615 47.4
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1341.3 1358 52.1
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1332.4 1485 50.4
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1330.1 1583 47.4
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1325.5 1650 47.2
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1319.7 1660 47.2
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1288.1 1567 46.6
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1287.3 1703 45.4
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1286.2 1559 46.2
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1285.4 1560 46.2
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1283.5 1650 46.1
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1282.7 1568 46.2
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1280.0 1592 46.5
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1252.3 1596 45.4
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 0.0e+00 1225.7 1496 47.8
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 0.0e+00 1204.5 1524 46.5
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1181.4 1668 41.7
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 0.0e+00 1167.5 1572 42.9
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1164.4 1323 49.4
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1161.7 1322 49.2
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 0.0e+00 1161.0 1094 54.9
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 0.0e+00 1157.5 1324 48.9
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 0.0e+00 1155.2 1322 49.2
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 0.0e+00 1146.3 1600 43.3
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 0.0e+00 1135.2 1570 43.4
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 5.2e-304 1048.5 1632 41.4
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 1.4e-285 987.3 1610 39.3
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 1.8e-285 986.9 964 54.0
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 3.4e-207 726.9 773 52.3
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 4.2e-205 719.9 817 51.0
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 5.9e-199 699.5 1309 35.4
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.7e-198 698.0 1050 41.5
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 2.2e-193 681.0 1713 31.7
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.1e-186 658.7 1616 30.0
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 5.2e-179 633.3 798 44.0
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 2.7e-172 610.9 577 55.1
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 1.0e-163 582.4 298 100.0
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 3.0e-163 580.9 897 38.9
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 6.8e-163 579.7 806 42.6
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 2.0e-159 568.2 731 45.4
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 5.4e-144 516.9 1255 29.2
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 8.6e-142 509.6 1522 29.2
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 1.3e-137 495.7 582 47.9
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 5.4e-136 490.3 682 43.1
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 3.8e-121 441.0 232 100.0
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 4.9e-121 440.7 394 59.4
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.6e-119 435.6 492 48.8
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 2.4e-112 411.8 549 45.0
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.5e-90 337.8 650 37.5
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 3.6e-71 275.0 412 42.0
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 3.7e-68 265.0 193 69.9
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 2.5e-64 252.3 493 36.5
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 7.5e-53 214.2 306 46.1
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 3.7e-52 211.8 124 81.5
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 3.8e-49 201.8 924 24.9
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 8.6e-49 200.7 428 34.1
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 3.4e-45 188.7 293 42.3
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 9.8e-45 187.2 167 55.7
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 6.8e-38 164.5 337 39.2
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.6e-37 162.5 215 42.8
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 1.4e-35 156.8 130 65.4
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 2.7e-34 152.5 152 55.3
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 2.1e-31 142.9 128 57.0
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.0e-30 138.7 207 41.5
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 1.2e-29 137.1 96 68.8
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.6e-29 136.0 207 41.1
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.5e-29 134.4 202 40.1
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.7e-28 133.3 123 56.1
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.9e-28 132.5 192 40.6
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.4e-28 131.3 192 40.6
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.3e-25 122.9 180 39.4
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.6e-24 118.2 150 46.7
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-23 117.1 142 43.7
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.7e-23 115.2 149 43.6
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.8e-22 111.3 149 43.0
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.9e-22 110.9 149 43.6
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.0e-21 109.8 149 43.0
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.9e-20 105.1 112 47.3
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 1.0e-17 97.4 73 67.1
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.3e-16 92.0 135 45.2
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 5.6e-16 91.7 63 65.1
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 1.5e-13 83.6 634 22.9
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 7.6e-13 81.3 108 40.7
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.4e-11 76.3 357 24.9
Medtr2g060565 Medicago truncatula HOM05D004423 ORTHO05D005464 8.1e-07 61.2 54 50.0
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 3.1e-06 59.3 107 35.5
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 6.9e-06 58.2 111 31.5


User provided reference genes

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