Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0031F.1_g018420 Hydrangea macrophylla HOM05D000223 ORTHO05D016846 8.8e-125 450.3 226 100.0
Hma1.2p1_0031F.1_g018410 Hydrangea macrophylla HOM05D000223 ORTHO05D008670 4.0e-69 265.4 140 94.3
PGR142G0562 Punica granatum HOM05D000223 ORTHO05D008670 4.2e-58 228.8 133 82.7
Dinv00874 Davidia involucrata HOM05D000223 ORTHO05D016846 1.6e-57 226.9 140 80.7
Dinv30090 Davidia involucrata HOM05D000223 ORTHO05D008670 1.6e-57 226.9 133 84.2
CSS0040284 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D008670 5.1e-56 221.9 133 82.7
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 5.1e-56 221.9 133 82.0
Cpa.g.sc37.35 Carica papaya HOM05D000223 ORTHO05D008670 6.7e-56 221.5 133 80.5
Eucgr.K01673 Eucalyptus grandis HOM05D000223 ORTHO05D008670 6.7e-56 221.5 133 81.2
CANSAT35G0549 Cannabis sativa HOM05D000223 ORTHO05D008670 1.9e-55 219.9 133 81.2
EL10Ac3g07290 Beta vulgaris HOM05D000223 ORTHO05D008670 5.7e-55 218.4 133 79.7
CiPaw.10G043700 Carya illinoinensis HOM05D000223 ORTHO05D008670 5.7e-55 218.4 133 79.7
Eucgr.L02445 Eucalyptus grandis HOM05D000223 ORTHO05D008670 5.7e-55 218.4 133 79.7
AUR62021044 Chenopodium quinoa HOM05D000223 ORTHO05D008670 1.6e-54 216.9 133 76.7
BolC3t15109H Brassica oleracea HOM05D000223 ORTHO05D008670 3.7e-54 215.7 133 76.7
Potri.016G030800 Populus trichocarpa HOM05D000223 ORTHO05D008670 3.7e-54 215.7 133 78.9
Ciclev10011248m.g Citrus clementina HOM05D000223 ORTHO05D008670 6.3e-54 214.9 133 76.7
Manes.08G063732 Manihot esculenta HOM05D000223 ORTHO05D008670 6.3e-54 214.9 133 79.7
GSVIVG01025802001 Vitis vinifera HOM05D000223 ORTHO05D008670 6.3e-54 214.9 133 82.0
A03p23000 Brassica napus HOM05D000223 ORTHO05D008670 8.2e-54 214.5 133 75.9
TAR633G0654 Trochodendron aralioides HOM05D000223 ORTHO05D008670 8.2e-54 214.5 133 78.2
Nn7g36998 Nelumbo nucifera HOM05D000223 ORTHO05D008670 1.1e-53 214.2 133 77.4
BcaB01g03508 Brassica carinata HOM05D000223 ORTHO05D008670 1.4e-53 213.8 133 75.2
AUR62018399 Chenopodium quinoa HOM05D000223 ORTHO05D008670 1.4e-53 213.8 133 75.2
Thecc.05G122400 Theobroma cacao HOM05D000223 ORTHO05D008670 1.8e-53 213.4 133 77.4
TWI53G0492 Tripterygium wilfordii HOM05D000223 ORTHO05D008670 3.1e-53 212.6 133 78.2
vmacro07765 Vaccinium macrocarpon HOM05D000088 ORTHO05D008670 4.1e-53 212.2 133 78.9
Actinidia17970 Actinidia chinensis HOM05D000494 ORTHO05D008670 5.3e-53 211.8 133 79.7
BcaC01g05371 Brassica carinata HOM05D000223 ORTHO05D008670 6.9e-53 211.5 131 75.6
Cc06_g20510 Coffea canephora HOM05D000494 ORTHO05D008670 9.0e-53 211.1 140 73.6
Lalb_Chr21g0316801 Lupinus albus HOM05D000223 ORTHO05D008670 9.0e-53 211.1 132 78.0
Sc25g0005540 Simmondsia chinensis HOM05D000223 ORTHO05D008670 9.0e-53 211.1 133 75.9
Migut.J01618 Erythranthe guttata HOM05D000223 ORTHO05D008670 1.2e-52 210.7 133 76.7
ATR0724G099 Amborella trichopoda HOM05D000223 ORTHO05D008670 1.5e-52 210.3 131 77.1
BraA03t11523Z Brassica rapa HOM05D000223 ORTHO05D008670 2.6e-52 209.5 131 75.6
HanXRQChr10g0298501 Helianthus annuus HOM05D000223 ORTHO05D008670 2.6e-52 209.5 133 75.9
Sabra16G0034100 Salix brachista HOM05D000494 ORTHO05D008670 2.6e-52 209.5 133 75.9
Atru.chr1.1351 Acer truncatum HOM05D000223 ORTHO05D008670 3.4e-52 209.1 133 75.9
COL.COLO4_19401 Corchorus olitorius HOM05D000223 ORTHO05D008670 3.4e-52 209.1 133 75.2
Ah.04g150620 Amaranthus hybridus HOM05D000223 ORTHO05D008670 4.5e-52 208.8 133 74.4
MD12G1099600 Malus domestica HOM05D000223 ORTHO05D008670 4.5e-52 208.8 133 75.9
Nitab4.5_0002068g0040 Nicotiana tabacum HOM05D000223 ORTHO05D008670 4.5e-52 208.8 129 79.8
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 7.6e-52 208.0 133 74.4
Duzib128G1945 Durio zibethinus HOM05D000223 ORTHO05D008670 1.3e-51 207.2 133 73.7
RhsimUnG0018900 Rhododendron simsii HOM05D000494 ORTHO05D008670 1.3e-51 207.2 131 79.4
THA.LOC104814580 Tarenaya hassleriana HOM05D000223 ORTHO05D008670 1.3e-51 207.2 133 75.2
Gohir.A13G001700 Gossypium hirsutum HOM05D000223 ORTHO05D008670 1.7e-51 206.8 133 73.7
VMungo0720G1770 Vigna mungo HOM05D000223 ORTHO05D008670 1.7e-51 206.8 133 73.7
ClCG10G016330 Citrullus lanatus HOM05D000223 ORTHO05D008670 2.2e-51 206.5 131 75.6
Thhalv10016363m.g Eutrema salsugineum HOM05D000223 ORTHO05D008670 2.2e-51 206.5 133 74.4
TPR.G16472 Trifolium pratense HOM05D000223 ORTHO05D008670 3.8e-51 205.7 133 75.9
Glyma.02G162300 Glycine max HOM05D000223 ORTHO05D008670 5.0e-51 205.3 133 74.4
Hund19071 Selenicereus undatus HOM05D000223 ORTHO05D008670 6.5e-51 204.9 133 73.7
FAN15G2663 Fragaria x ananassa HOM05D000223 ORTHO05D008670 1.1e-50 204.1 129 75.2
Lj5g0002002 Lotus japonicus HOM05D000223 ORTHO05D008670 1.4e-50 203.8 131 76.3
RhsimUnG0209300 Rhododendron simsii HOM05D000494 ORTHO05D008670 1.4e-50 203.8 156 68.6
Carub.0004s2318 Capsella rubella HOM05D000223 ORTHO05D008670 1.9e-50 203.4 133 73.7
Gohir.D13G000200 Gossypium hirsutum HOM05D000223 ORTHO05D008670 1.9e-50 203.4 133 72.9
Gorai.013G001000 Gossypium raimondii HOM05D000223 ORTHO05D008670 1.9e-50 203.4 133 72.9
RcHm_v2.0_Chr6g0284731 Rosa chinensis HOM05D000223 ORTHO05D008670 1.9e-50 203.4 133 73.7
Sp4g23190 Schrenkiella parvula HOM05D000223 ORTHO05D008670 1.9e-50 203.4 149 69.1
Solyc01g056690.4 Solanum lycopersicum HOM05D000223 ORTHO05D008670 1.9e-50 203.4 133 75.9
SGA_v2.0_scaffold69G23178 Striga asiatica HOM05D000223 ORTHO05D008670 1.9e-50 203.4 133 73.7
FvH4_2g18940 Fragaria vesca HOM05D000223 ORTHO05D008670 3.2e-50 202.6 133 72.9
FAN24G3139 Fragaria x ananassa HOM05D000223 ORTHO05D008670 3.2e-50 202.6 133 72.9
Sopen01g020840 Solanum pennellii HOM05D000223 ORTHO05D008670 3.2e-50 202.6 133 75.9
PSO384G3882 Papaver somniferum HOM05D000223 ORTHO05D008670 4.2e-50 202.2 133 72.2
Medtr1g050520 Medicago truncatula HOM05D000223 ORTHO05D008670 7.2e-50 201.4 133 74.4
Ca_05362_v3 Cicer arietinum L. HOM05D000223 ORTHO05D008670 1.2e-49 200.7 133 73.7
CsaV3_3G040010 Cucumis sativus L. HOM05D000223 ORTHO05D008670 1.2e-49 200.7 133 71.4
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 1.2e-49 200.7 134 73.9
Aa31LG3G1240 Aethionema arabicum HOM05D000223 ORTHO05D008670 1.6e-49 200.3 133 69.9
Sed0010522 Sechium edule HOM05D000223 ORTHO05D008670 1.6e-49 200.3 133 72.2
AL4G38810 Arabidopsis lyrata HOM05D000223 ORTHO05D008670 6.1e-49 198.4 133 71.4
MELO3C009743.2 Cucumis melo HOM05D000223 ORTHO05D008670 6.1e-49 198.4 133 71.4
MBI10_g42733_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D008670 7.9e-49 198.0 130 73.1
ECA247G3244 Erigeron canadensis HOM05D000223 ORTHO05D008670 1.3e-48 197.2 134 75.4
MSTRG.19778 Avicennia marina HOM05D000088 ORTHO05D008670 1.8e-48 196.8 133 72.9
Peaxi162Scf00470g00048 Petunia axillaris HOM05D000223 ORTHO05D008670 2.3e-48 196.4 133 72.2
Aqoxy1G00057 Aquilegia oxysepala HOM05D000223 ORTHO05D008670 3.0e-48 196.1 131 73.3
CAN.G197.1 Capsicum annuum HOM05D000223 ORTHO05D008670 5.1e-48 195.3 133 72.9
CARHR135980 Cardamine hirsuta HOM05D000223 ORTHO05D008670 1.5e-47 193.7 133 69.9
Os01g0541900 Oryza sativa ssp. japonica HOM05D000223 ORTHO05D008670 4.1e-45 185.7 140 63.6
C03p27270 Brassica napus HOM05D000223 ORTHO05D008670 1.2e-44 184.1 133 66.9
Lsat_1_v5_gn_9_32241 Lactuca sativa HOM05D000223 ORTHO05D008670 3.4e-44 182.6 131 71.8
BcaNung05542 Brassica carinata HOM05D000088 ORTHO05D008670 2.2e-43 179.9 131 67.9
Lj1C1082G8 Lonicera japonica HOM05D000223 ORTHO05D008670 2.9e-35 152.9 96 78.1
Atru.chr1.1332 Acer truncatum HOM05D000223 ORTHO05D008670 2.1e-33 146.7 131 58.0
Haze_20277 Corylus avellana HOM05D000223 ORTHO05D016846 1.4e-32 144.1 92 75.0
Haze_20282 Corylus avellana HOM05D000223 ORTHO05D016846 1.4e-32 144.1 92 75.0
Pp3c4_23550 Physcomitrium patens HOM05D000223 ORTHO05D008670 6.7e-32 141.7 125 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1033 Anthoceros agrestis HOM05D000223 ORTHO05D008670 3.3e-31 139.4 125 56.0
CDE02G3287 Ceratophyllum demersum HOM05D000223 ORTHO05D008670 7.4e-31 138.3 130 56.2
SMO115G0162 Selaginella moellendorffii HOM05D000223 ORTHO05D008670 1.4e-29 134.0 123 56.9
SalBow6G2441 Salvia bowleyana HOM05D000088 ORTHO05D008670 3.1e-29 132.9 92 71.7
SEGI_28896 Sequoiadendron giganteum HOM05D000223 ORTHO05D016846 1.2e-28 131.0 94 62.8
arahy.Tifrunner.gnm1.ann1.5JYC56 Arachis hypogaea HOM05D000223 ORTHO05D008670 1.3e-27 127.5 131 54.2
arahy.Tifrunner.gnm1.ann1.DZ1TRF Arachis hypogaea HOM05D000223 ORTHO05D008670 1.3e-27 127.5 131 54.2
HPP92_021586 Vanilla planifolia HOM05D000394 ORTHO05D000299 5.0e-27 125.6 95 58.9
Nitab4.5_0001513g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 7.2e-26 121.7 75 78.7
Nitab4.5_0001958g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 3.6e-25 119.4 75 77.3
CSS0032775 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D016846 1.5e-15 87.4 51 76.5
MCO08G027 Micromonas commoda HOM05D000494 ORTHO05D008670 4.4e-15 85.9 120 38.3
SGA_v2.0_scaffold66G22299 Striga asiatica HOM05D000223 ORTHO05D016846 2.8e-14 83.2 83 53.0
Cre17.g715700 Chlamydomonas reinhardtii HOM05D000088 ORTHO05D008670 2.0e-12 77.0 113 36.3
PRCOL_00003233 Prasinoderma coloniale HOM05D000494 ORTHO05D008670 1.3e-11 74.3 124 34.7
HPP92_021561 Vanilla planifolia HOM05D000223 ORTHO05D008670 1.3e-11 74.3 131 35.9
Oeu044235.1 Olea europaea HOM05D000223 ORTHO05D008670 1.6e-09 67.4 110 40.0
FAN03G1594 Fragaria x ananassa HOM05D000985 ORTHO05D011815 3.6e-09 66.2 42 76.2
MD14G1093400 Malus domestica HOM05D000223 ORTHO05D016846 7.5e-07 58.5 75 50.7
AT2G40860 Arabidopsis thaliana HOM05D000223 ORTHO05D008670 9.8e-07 58.2 35 74.3


User provided reference genes

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