Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0031F.1_g018380 Hydrangea macrophylla HOM05D001916 ORTHO05D036397 6.2e-70 267.3 131 100.0
Hma1.2p1_1674F.1_g296960 Hydrangea macrophylla HOM05D001916 ORTHO05D036397 4.0e-53 211.5 116 93.1
Hma1.2p1_2989F.1_g331310 Hydrangea macrophylla HOM05D000879 ORTHO05D036397 1.9e-26 122.9 66 92.4
Dinv35270 Davidia involucrata HOM05D001916 ORTHO05D003272 1.3e-24 116.7 77 79.2
Dinv28377 Davidia involucrata HOM05D001916 ORTHO05D003272 6.7e-24 114.4 65 87.7
Gohir.A12G253000 Gossypium hirsutum HOM05D001916 ORTHO05D003272 3.7e-22 108.6 80 70.0
Gohir.D12G255426 Gossypium hirsutum HOM05D001916 ORTHO05D003272 4.8e-22 108.2 80 70.0
Gohir.D12G255451 Gossypium hirsutum HOM05D001916 ORTHO05D003272 4.8e-22 108.2 80 70.0
Gorai.008G273400 Gossypium raimondii HOM05D001916 ORTHO05D003272 4.8e-22 108.2 80 70.0
Actinidia31845 Actinidia chinensis HOM05D001916 ORTHO05D003272 1.1e-21 107.1 80 70.0
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 3.1e-21 105.5 68 76.5
Rhsim03G0192600 Rhododendron simsii HOM05D001916 ORTHO05D003272 1.2e-20 103.6 100 59.0
Duzib205G0940 Durio zibethinus HOM05D001916 ORTHO05D003272 2.6e-20 102.4 77 70.1
Nitab4.5_0000472g0280 Nicotiana tabacum HOM05D001916 ORTHO05D003272 3.4e-20 102.1 65 76.9
Nitab4.5_0007653g0010 Nicotiana tabacum HOM05D001916 ORTHO05D003272 3.4e-20 102.1 65 76.9
TWI14G0889 Tripterygium wilfordii HOM05D001916 ORTHO05D003272 4.5e-20 101.7 65 76.9
vmacro09808 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 4.5e-20 101.7 66 77.3
CSS0028210 Camellia sinensis var. sinensis HOM05D001916 ORTHO05D003272 7.6e-20 100.9 67 76.1
Aqoxy7G00196 Aquilegia oxysepala HOM05D001916 ORTHO05D003272 1.0e-19 100.5 65 75.4
Manes.06G153900 Manihot esculenta HOM05D001916 ORTHO05D003272 1.0e-19 100.5 71 71.8
SGA_v2.0_scaffold55G19713 Striga asiatica HOM05D001916 ORTHO05D003272 1.0e-19 100.5 65 76.9
VMungo0464G1486 Vigna mungo HOM05D001916 ORTHO05D003272 1.3e-19 100.1 69 69.6
Gohir.D11G231500 Gossypium hirsutum HOM05D001916 ORTHO05D003272 1.7e-19 99.8 65 75.4
Phvul.004G104600 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 1.7e-19 99.8 64 75.0
DCAR_010650 Daucus carota HOM05D001916 ORTHO05D003272 2.2e-19 99.4 70 72.9
MBI06_g33537_MAGBIO Magnolia biondii HOM05D001916 ORTHO05D003272 2.2e-19 99.4 65 75.4
Peaxi162Scf00444g00317 Petunia axillaris HOM05D001916 ORTHO05D003272 2.2e-19 99.4 65 75.4
PGSC0003DMG400020884 Solanum tuberosum HOM05D001916 ORTHO05D003272 4.9e-19 98.2 65 75.4
CiPaw.06G004400 Carya illinoinensis HOM05D001916 ORTHO05D003272 6.5e-19 97.8 65 72.3
Potri.004G071100 Populus trichocarpa HOM05D001916 ORTHO05D003272 6.5e-19 97.8 65 75.4
vmacro13977 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 6.5e-19 97.8 94 58.5
CiPaw.12G018800 Carya illinoinensis HOM05D001916 ORTHO05D003272 8.4e-19 97.4 65 73.8
MD01G1210400 Malus domestica HOM05D001916 ORTHO05D003272 8.4e-19 97.4 71 69.0
Oeu009294.1 Olea europaea HOM05D001916 ORTHO05D003272 8.4e-19 97.4 65 75.4
RcHm_v2.0_Chr1g0378891 Rosa chinensis HOM05D001916 ORTHO05D003272 8.4e-19 97.4 72 70.8
Zm00001eb159420 Zea mays HOM05D001916 ORTHO05D003272 8.4e-19 97.4 71 71.8
CAN.G126.17 Capsicum annuum HOM05D001916 ORTHO05D003272 1.1e-18 97.1 65 73.8
Glyma.16G176200 Glycine max HOM05D001916 ORTHO05D003272 1.1e-18 97.1 69 68.1
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 1.1e-18 97.1 65 72.3
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.1e-18 97.1 71 69.0
Peaxi162Scf00618g00626 Petunia axillaris HOM05D001916 ORTHO05D003272 1.1e-18 97.1 65 73.8
TAR375G0777 Trochodendron aralioides HOM05D001916 ORTHO05D003272 1.1e-18 97.1 72 70.8
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 1.4e-18 96.7 65 72.3
CAN.G204.27 Capsicum annuum HOM05D001916 ORTHO05D003272 1.9e-18 96.3 66 71.2
Actinidia27360 Actinidia chinensis HOM05D001916 ORTHO05D003272 2.5e-18 95.9 65 76.9
AUR62031443 Chenopodium quinoa HOM05D001916 ORTHO05D003272 2.5e-18 95.9 68 69.1
Migut.F00275 Erythranthe guttata HOM05D001916 ORTHO05D003272 2.5e-18 95.9 65 73.8
Gorai.003G069500 Gossypium raimondii HOM05D001916 ORTHO05D003272 2.5e-18 95.9 65 73.8
Sed0015019 Sechium edule HOM05D001916 ORTHO05D003272 2.5e-18 95.9 71 69.0
arahy.Tifrunner.gnm1.ann1.DRAR7X Arachis hypogaea HOM05D001916 ORTHO05D003272 3.2e-18 95.5 66 69.7
arahy.Tifrunner.gnm1.ann1.MU20M7 Arachis hypogaea HOM05D001916 ORTHO05D003272 3.2e-18 95.5 66 69.7
EL10Ac3g05391 Beta vulgaris HOM05D001916 ORTHO05D003272 3.2e-18 95.5 68 69.1
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.2e-18 95.5 69 69.6
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.2e-18 95.5 69 69.6
Os01g0624500 Oryza sativa ssp. japonica HOM05D001916 ORTHO05D003272 3.2e-18 95.5 71 70.4
Potri.017G149800 Populus trichocarpa HOM05D001916 ORTHO05D003272 3.2e-18 95.5 65 73.8
FvH4_7g30490 Fragaria vesca HOM05D001916 ORTHO05D003272 4.2e-18 95.1 68 70.6
FAN06G1813 Fragaria x ananassa HOM05D001916 ORTHO05D003272 5.5e-18 94.7 68 70.6
FAN06G4606 Fragaria x ananassa HOM05D001916 ORTHO05D003272 5.5e-18 94.7 68 70.6
Glyma.10G230000 Glycine max HOM05D001916 ORTHO05D003272 5.5e-18 94.7 65 72.3
Sabra04G0047000 Salix brachista HOM05D001916 ORTHO05D003272 5.5e-18 94.7 65 73.8
Ca_18030_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 1.6e-17 93.2 69 66.7
Solyc03g007670.4 Solanum lycopersicum HOM05D001916 ORTHO05D003272 1.6e-17 93.2 65 70.8
Sopen03g003600 Solanum pennellii HOM05D001916 ORTHO05D003272 1.6e-17 93.2 65 70.8
PGSC0003DMG400028904 Solanum tuberosum HOM05D001916 ORTHO05D003272 1.6e-17 93.2 64 71.9
MD07G1280600 Malus domestica HOM05D001916 ORTHO05D003272 2.1e-17 92.8 71 66.2
arahy.Tifrunner.gnm1.ann1.MC01IH Arachis hypogaea HOM05D001916 ORTHO05D003272 2.7e-17 92.4 65 69.2
AUR62021095 Chenopodium quinoa HOM05D001916 ORTHO05D003272 2.7e-17 92.4 78 61.5
MSTRG.8696 Avicennia marina HOM05D001916 ORTHO05D003272 3.5e-17 92.0 65 70.8
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 4.6e-17 91.7 65 69.2
Eucgr.D01807 Eucalyptus grandis HOM05D001916 ORTHO05D003272 6.0e-17 91.3 71 66.2
Lj2g0006755 Lotus japonicus HOM05D001916 ORTHO05D003272 6.0e-17 91.3 69 63.8
Manes.02G016700 Manihot esculenta HOM05D001916 ORTHO05D003272 6.0e-17 91.3 69 68.1
Prupe.2G302800 Prunus persica HOM05D001916 ORTHO05D003272 6.0e-17 91.3 65 67.7
QL09p012344 Quercus lobata HOM05D001916 ORTHO05D003272 6.0e-17 91.3 65 69.2
SalBow4G2106 Salvia bowleyana HOM05D001916 ORTHO05D003272 6.0e-17 91.3 64 71.9
Lalb_Chr09g0320811 Lupinus albus HOM05D001916 ORTHO05D003272 7.9e-17 90.9 71 63.4
Glyma.01G222400 Glycine max HOM05D001916 ORTHO05D003272 1.0e-16 90.5 65 66.2
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 1.0e-16 90.5 65 69.2
C09p35370 Brassica napus HOM05D001916 ORTHO05D003272 1.3e-16 90.1 66 66.7
BolC9t56378H Brassica oleracea HOM05D001916 ORTHO05D003272 1.3e-16 90.1 66 66.7
Hund11708 Selenicereus undatus HOM05D001916 ORTHO05D003272 1.3e-16 90.1 68 64.7
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 1.8e-16 89.7 65 67.7
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 1.8e-16 89.7 68 67.6
Medtr6g053290 Medicago truncatula HOM05D001916 ORTHO05D003272 2.3e-16 89.4 65 69.2
CANSAT21G0998 Cannabis sativa HOM05D001916 ORTHO05D003272 3.0e-16 89.0 71 66.2
A09p27900 Brassica napus HOM05D001916 ORTHO05D003272 6.7e-16 87.8 66 66.7
BraA09t38359Z Brassica rapa HOM05D001916 ORTHO05D003272 6.7e-16 87.8 66 66.7
ECA238G4709 Erigeron canadensis HOM05D001916 ORTHO05D003272 6.7e-16 87.8 68 63.2
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 8.7e-16 87.4 65 64.6
A03p29330 Brassica napus HOM05D001916 ORTHO05D003272 1.1e-15 87.0 66 66.7
C03p35430 Brassica napus HOM05D001916 ORTHO05D003272 1.1e-15 87.0 66 66.7
BolC3t15856H Brassica oleracea HOM05D001916 ORTHO05D003272 1.1e-15 87.0 66 66.7
BraA03t12130Z Brassica rapa HOM05D001916 ORTHO05D003272 1.1e-15 87.0 66 66.7
Sabra17G0124700 Salix brachista HOM05D001916 ORTHO05D003272 1.1e-15 87.0 65 66.2
Glyma.11G021000 Glycine max HOM05D001916 ORTHO05D003272 1.5e-15 86.7 64 65.6
QL02p033314 Quercus lobata HOM05D001916 ORTHO05D003272 2.5e-15 85.9 65 63.1
QL93p0326_0012 Quercus lobata HOM05D001916 ORTHO05D003272 2.5e-15 85.9 65 63.1
TPR.G6657 Trifolium pratense HOM05D001916 ORTHO05D003272 2.5e-15 85.9 64 65.6
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 3.3e-15 85.5 70 62.9
CiPaw.12G088900 Carya illinoinensis HOM05D001916 ORTHO05D003272 7.4e-15 84.3 71 63.4
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 7.4e-15 84.3 70 61.4
HanXRQChr13g0392421 Helianthus annuus HOM05D001916 ORTHO05D003272 9.6e-15 84.0 68 60.3
Phvul.002G160300 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 9.6e-15 84.0 65 61.5
C01p18550 Brassica napus HOM05D001916 ORTHO05D003272 1.6e-14 83.2 67 62.7
BolC1t01780H Brassica oleracea HOM05D001916 ORTHO05D003272 1.6e-14 83.2 67 62.7
Lsat_1_v5_gn_2_131520 Lactuca sativa HOM05D001916 ORTHO05D003272 1.6e-14 83.2 68 58.8
GSVIVG01019422001 Vitis vinifera HOM05D001916 ORTHO05D003272 2.1e-14 82.8 65 66.2
BcaNung01067 Brassica carinata HOM05D001916 ORTHO05D003272 3.7e-14 82.0 63 65.1
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 3.7e-14 82.0 65 61.5
Lsat_1_v5_gn_8_6441 Lactuca sativa HOM05D001916 ORTHO05D003272 4.8e-14 81.6 68 58.8
BcaC09g50975 Brassica carinata HOM05D001916 ORTHO05D003272 8.2e-14 80.9 66 62.1
Eucgr.A02503 Eucalyptus grandis HOM05D001916 ORTHO05D003272 1.1e-13 80.5 72 55.6
Pp3c22_12710 Physcomitrium patens HOM05D001916 ORTHO05D003272 6.9e-13 77.8 75 50.7
HPP92_009818 Vanilla planifolia HOM05D001916 ORTHO05D003272 6.9e-13 77.8 73 56.2
Eucgr.A02502 Eucalyptus grandis HOM05D001916 ORTHO05D003272 4.5e-12 75.1 65 60.0
Actinidia08592 Actinidia chinensis HOM05D001916 ORTHO05D003272 1.0e-11 73.9 50 76.0
vmacro06613 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 1.3e-11 73.6 48 75.0
Oeu011795.1 Olea europaea HOM05D001916 ORTHO05D003272 1.7e-11 73.2 111 45.0
Lalb_Chr21g0305291 Lupinus albus HOM05D001916 ORTHO05D003272 2.9e-11 72.4 65 58.5
SalBow2G1297 Salvia bowleyana HOM05D001916 ORTHO05D003272 8.4e-11 70.9 65 58.5
ATR0721G095 Amborella trichopoda HOM05D001916 ORTHO05D003272 1.1e-10 70.5 64 53.1
CBR_g30800 Chara braunii HOM05D001916 ORTHO05D003272 1.2e-09 67.0 63 54.0
Oeu036893.1 Olea europaea HOM05D001916 ORTHO05D003272 1.2e-09 67.0 43 76.7
Lj1C1007T6 Lonicera japonica HOM05D001916 ORTHO05D003272 4.6e-09 65.1 65 56.9
Rhsim07G0087100 Rhododendron simsii HOM05D001916 ORTHO05D003272 4.6e-09 65.1 142 34.5
Gohir.D08G109200 Gossypium hirsutum HOM05D001916 ORTHO05D003272 1.0e-08 63.9 65 52.3
Gorai.004G116900 Gossypium raimondii HOM05D001916 ORTHO05D003272 1.0e-08 63.9 65 52.3
Gohir.A11G225202 Gossypium hirsutum HOM05D001916 ORTHO05D003272 1.3e-08 63.5 65 53.8
Hma1.2p1_0327F.1_g126510 Hydrangea macrophylla HOM05D001916 ORTHO05D003272 8.7e-08 60.8 68 52.9
Actinidia03143 Actinidia chinensis HOM05D001916 ORTHO05D003272 1.1e-07 60.5 68 50.0
COL.COLO4_30287 Corchorus olitorius HOM05D001916 ORTHO05D003272 1.9e-07 59.7 77 46.8
Gohir.A08G085400 Gossypium hirsutum HOM05D001916 ORTHO05D003272 2.5e-07 59.3 65 49.2
Solyc06g036420.3 Solanum lycopersicum HOM05D001916 ORTHO05D003272 2.5e-07 59.3 50 60.0
Zm00001eb051920 Zea mays HOM05D001789 ORTHO05D001755 3.3e-07 58.9 74 41.9
COL.COLO4_30633 Corchorus olitorius HOM05D001916 ORTHO05D003272 5.7e-07 58.2 65 50.8
Thecc.03G186400 Theobroma cacao HOM05D001916 ORTHO05D003272 5.7e-07 58.2 65 49.2
SMO358G0511 Selaginella moellendorffii HOM05D001916 ORTHO05D003272 7.4e-07 57.8 77 40.3
SEGI_38474 Sequoiadendron giganteum HOM05D001916 ORTHO05D003272 7.4e-07 57.8 64 46.9
Hund04803 Selenicereus undatus HOM05D001916 ORTHO05D003272 1.6e-06 56.6 68 47.1
TAR636G2302 Trochodendron aralioides HOM05D001916 ORTHO05D003272 2.2e-06 56.2 65 52.3
TPR.G9167 Trifolium pratense HOM05D001916 ORTHO05D003272 2.8e-06 55.8 69 47.8
BcaC06g35158 Brassica carinata HOM05D001916 ORTHO05D003272 3.7e-06 55.5 66 48.5
Duzib068G1100 Durio zibethinus HOM05D001916 ORTHO05D003272 4.8e-06 55.1 65 47.7
Hma1.2p1_1713F.1_g298910 Hydrangea macrophylla HOM05D001916 ORTHO05D003272 8.2e-06 54.3 32 78.1


User provided reference genes

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