Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0028F.1_g017910 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 3.7e-79 298.1 149 100.0
Hma1.2p1_0028F.1_g017890 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 3.3e-43 178.7 160 63.1
Hma1.2p1_0325F.1_g126020 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 4.9e-39 164.9 162 58.6
Dinv42799 Davidia involucrata HOM05D004005 ORTHO05D004876 8.3e-39 164.1 160 58.1
Dinv43302 Davidia involucrata HOM05D004005 ORTHO05D004876 8.3e-39 164.1 160 58.1
Dinv41324 Davidia involucrata HOM05D004005 ORTHO05D004876 3.2e-38 162.2 159 59.1
QL02p094609 Quercus lobata HOM05D004005 ORTHO05D004876 3.2e-38 162.2 160 58.1
CSS0024178 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 2.7e-37 159.1 163 55.2
Thecc.09G157600 Theobroma cacao HOM05D004005 ORTHO05D004876 8.6e-36 154.1 163 55.2
Haze_21258 Corylus avellana HOM05D004005 ORTHO05D004876 1.5e-35 153.3 135 60.7
Manes.14G150200 Manihot esculenta HOM05D004005 ORTHO05D004876 3.3e-35 152.1 161 55.3
Duzib168G0635 Durio zibethinus HOM05D004005 ORTHO05D004876 5.6e-35 151.4 163 53.4
CiPaw.08G000800 Carya illinoinensis HOM05D004005 ORTHO05D004876 7.3e-35 151.0 160 53.8
Duzib150G0934 Durio zibethinus HOM05D004005 ORTHO05D004876 7.3e-35 151.0 163 53.4
PSO063G3364 Papaver somniferum HOM05D004005 ORTHO05D004876 7.3e-35 151.0 161 55.3
PSO782G3855 Papaver somniferum HOM05D004005 ORTHO05D004876 7.3e-35 151.0 161 55.3
Peaxi162Scf00038g00320 Petunia axillaris HOM05D004005 ORTHO05D004876 7.3e-35 151.0 163 54.0
COL.COLO4_10070 Corchorus olitorius HOM05D004005 ORTHO05D004876 9.5e-35 150.6 163 53.4
Gohir.A08G092600 Gossypium hirsutum HOM05D004005 ORTHO05D004876 1.6e-34 149.8 163 54.6
Gorai.004G105600 Gossypium raimondii HOM05D004005 ORTHO05D004876 2.1e-34 149.4 163 54.0
CSS0032478 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 4.7e-34 148.3 163 53.4
AUR62039768 Chenopodium quinoa HOM05D004005 ORTHO05D004876 4.7e-34 148.3 155 54.8
Rhsim03G0261200 Rhododendron simsii HOM05D004005 ORTHO05D004876 6.2e-34 147.9 160 53.1
CAN.G1190.5 Capsicum annuum HOM05D004005 ORTHO05D004876 8.1e-34 147.5 161 54.0
Glyma.02G207800 Glycine max HOM05D004005 ORTHO05D004876 1.4e-33 146.7 160 54.4
AT4G28070 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 1.8e-33 146.4 151 57.6
Phvul.003G152600 Phaseolus vulgaris HOM05D004005 ORTHO05D004876 1.8e-33 146.4 160 51.9
Ca_21161_v3 Cicer arietinum L. HOM05D004005 ORTHO05D004876 2.4e-33 146.0 160 52.5
Thhalv10025101m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 2.4e-33 146.0 152 57.2
Peaxi162Scf00038g00327 Petunia axillaris HOM05D004005 ORTHO05D004876 3.1e-33 145.6 163 51.5
VMungo1215G0146 Vigna mungo HOM05D004005 ORTHO05D004876 3.1e-33 145.6 160 54.4
Gohir.D08G098200 Gossypium hirsutum HOM05D004005 ORTHO05D004876 4.0e-33 145.2 163 52.8
Eucgr.C01238 Eucalyptus grandis HOM05D004005 ORTHO05D004876 5.2e-33 144.8 162 55.6
Nitab4.5_0002545g0030 Nicotiana tabacum HOM05D004005 ORTHO05D004876 6.8e-33 144.4 163 52.1
TPR.G24854 Trifolium pratense HOM05D004005 ORTHO05D004876 8.9e-33 144.1 160 53.1
vmacro06047 Vaccinium macrocarpon HOM05D004005 ORTHO05D004876 8.9e-33 144.1 170 50.0
AUR62028391 Chenopodium quinoa HOM05D004005 ORTHO05D004876 1.5e-32 143.3 160 51.9
Psat0s3878g0040 Pisum sativum HOM05D004005 ORTHO05D004876 1.5e-32 143.3 160 51.2
Solyc07g006160.3 Solanum lycopersicum HOM05D004005 ORTHO05D004876 1.5e-32 143.3 161 51.6
Sopen07g002270 Solanum pennellii HOM05D004005 ORTHO05D004876 1.5e-32 143.3 161 51.6
PGSC0003DMG400011163 Solanum tuberosum HOM05D004005 ORTHO05D004876 1.5e-32 143.3 161 51.6
Nitab4.5_0003269g0020 Nicotiana tabacum HOM05D004005 ORTHO05D004876 2.0e-32 142.9 163 51.5
Lsat_1_v5_gn_5_88220 Lactuca sativa HOM05D004005 ORTHO05D004876 3.4e-32 142.1 161 53.4
Glyma.17G069900 Glycine max HOM05D004005 ORTHO05D004876 7.6e-32 141.0 162 53.1
Duzib187G0310 Durio zibethinus HOM05D004005 ORTHO05D004876 1.7e-31 139.8 162 50.6
TWI63G1233 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 1.7e-31 139.8 160 51.9
Aqoxy5G00992 Aquilegia oxysepala HOM05D004005 ORTHO05D004876 2.2e-31 139.4 163 49.7
DCAR_017932 Daucus carota HOM05D004005 ORTHO05D004876 2.2e-31 139.4 156 50.6
Medtr4g129950 Medicago truncatula HOM05D004005 ORTHO05D004876 1.1e-30 137.1 160 50.6
Cpa.g.sc199.4 Carica papaya HOM05D004005 ORTHO05D004876 1.4e-30 136.7 187 46.5
unitig_0.g2693 Utricularia gibba HOM05D004005 ORTHO05D004876 1.4e-30 136.7 163 50.9
arahy.Tifrunner.gnm1.ann1.GWW68B Arachis hypogaea HOM05D004005 ORTHO05D004876 3.2e-30 135.6 160 51.9
arahy.Tifrunner.gnm1.ann1.GLFY1J Arachis hypogaea HOM05D004005 ORTHO05D004876 5.4e-30 134.8 160 51.9
Lalb_Chr12g0198871 Lupinus albus HOM05D004005 ORTHO05D004876 9.2e-30 134.0 160 50.0
PGR102G1327 Punica granatum HOM05D004005 ORTHO05D004876 1.6e-29 133.3 152 52.0
AL7G21650 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 1.7e-28 129.8 161 50.3
Thhalv10025004m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 1.7e-28 129.8 162 51.9
Sp7g28370 Schrenkiella parvula HOM05D004005 ORTHO05D004876 2.3e-28 129.4 162 51.2
Carub.0007s1010 Capsella rubella HOM05D004005 ORTHO05D004876 6.6e-28 127.9 161 49.1
BolC7t46254H Brassica oleracea HOM05D004005 ORTHO05D004876 8.7e-28 127.5 162 51.2
BraA03t15047Z Brassica rapa HOM05D004005 ORTHO05D004876 1.9e-27 126.3 162 50.6
BcaNung00559 Brassica carinata HOM05D004005 ORTHO05D004876 3.3e-27 125.6 157 48.4
AT4G30490 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 4.3e-27 125.2 162 50.0
Lalb_Chr13g0300621 Lupinus albus HOM05D004005 ORTHO05D004876 5.6e-27 124.8 160 46.9
CARHR238380 Cardamine hirsuta HOM05D004005 ORTHO05D004876 2.8e-26 122.5 161 47.8
CDE02G0320 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 2.8e-26 122.5 160 46.9
GSVIVG01023713001 Vitis vinifera HOM05D004005 ORTHO05D004876 3.6e-26 122.1 83 78.3
Zm00001eb426980 Zea mays HOM05D004005 ORTHO05D004876 4.7e-26 121.7 161 48.4
Migut.J01404 Erythranthe guttata HOM05D004005 ORTHO05D004876 6.2e-26 121.3 162 46.9
Migut.K00290 Erythranthe guttata HOM05D004005 ORTHO05D004876 1.4e-25 120.2 83 75.9
TAR636G3166 Trochodendron aralioides HOM05D004005 ORTHO05D004876 1.8e-25 119.8 83 74.7
C07p57960 Brassica napus HOM05D004005 ORTHO05D004876 3.1e-25 119.0 183 42.6
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 3.1e-25 119.0 83 74.7
Lj9A725G34 Lonicera japonica HOM05D004005 ORTHO05D004876 3.1e-25 119.0 84 76.2
THA.LOC104817817 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 5.2e-25 118.2 83 77.1
HanXRQChr03g0065981 Helianthus annuus HOM05D004005 ORTHO05D004876 6.9e-25 117.9 83 74.7
RcHm_v2.0_Chr4g0405201 Rosa chinensis HOM05D004005 ORTHO05D004876 6.9e-25 117.9 83 74.7
TAR383G0006 Trochodendron aralioides HOM05D004005 ORTHO05D004876 6.9e-25 117.9 83 73.5
Lsat_1_v5_gn_7_51181 Lactuca sativa HOM05D004005 ORTHO05D004876 9.0e-25 117.5 83 73.5
Cc09_g08370 Coffea canephora HOM05D004005 ORTHO05D004876 1.5e-24 116.7 83 74.7
HanXRQChr10g0307841 Helianthus annuus HOM05D004005 ORTHO05D004876 2.0e-24 116.3 83 72.3
Potri.018G100900 Populus trichocarpa HOM05D004005 ORTHO05D004876 2.0e-24 116.3 84 75.0
A03p59900 Brassica napus HOM05D004005 ORTHO05D004876 2.6e-24 115.9 186 41.4
CSS0035914 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 2.6e-24 115.9 83 73.5
Oeu045108.2 Olea europaea HOM05D004005 ORTHO05D004876 2.6e-24 115.9 83 73.5
CDE04G0214 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 3.4e-24 115.5 160 45.6
Prupe.1G100000 Prunus persica HOM05D004005 ORTHO05D004876 3.4e-24 115.5 83 74.7
MD00G1158000 Malus domestica HOM05D004005 ORTHO05D004876 4.4e-24 115.2 83 75.9
MD13G1275200 Malus domestica HOM05D004005 ORTHO05D004876 4.4e-24 115.2 83 75.9
Oeu024901.3 Olea europaea HOM05D004005 ORTHO05D004876 7.6e-24 114.4 67 80.6
Sp7g26020 Schrenkiella parvula HOM05D004005 ORTHO05D004876 1.3e-23 113.6 83 73.5
MBI14_g16417_MAGBIO Magnolia biondii HOM05D004005 ORTHO05D004876 1.7e-23 113.2 83 72.3
MSTRG.26250 Avicennia marina HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 73.5
BcaC09g50514 Brassica carinata HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 73.5
BcaNung01599 Brassica carinata HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 73.5
A01p19450 Brassica napus HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 73.5
C01p24500 Brassica napus HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 73.5
BolC1t02399H Brassica oleracea HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 73.5
BraA01t01885Z Brassica rapa HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 73.5
MD16G1260700 Malus domestica HOM05D004005 ORTHO05D004876 2.9e-23 112.5 83 72.3
Actinidia38657 Actinidia chinensis HOM05D004005 ORTHO05D004876 3.8e-23 112.1 83 71.1
Carub.0007s1271 Capsella rubella HOM05D004005 ORTHO05D004876 3.8e-23 112.1 83 73.5
SEGI_21312 Sequoiadendron giganteum HOM05D004005 ORTHO05D004876 3.8e-23 112.1 84 69.0
ATR0580G234 Amborella trichopoda HOM05D004005 ORTHO05D004876 4.9e-23 111.7 83 71.1
Cc06_g14320 Coffea canephora HOM05D004005 ORTHO05D004876 4.9e-23 111.7 80 68.8
Sabra18G0086900 Salix brachista HOM05D004005 ORTHO05D004876 4.9e-23 111.7 68 79.4
Ciclev10008098m.g Citrus clementina HOM05D004005 ORTHO05D004876 6.4e-23 111.3 83 69.9
ClCG06G012740 Citrullus lanatus HOM05D004005 ORTHO05D004876 8.4e-23 110.9 83 72.3
CSS0023830 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.1e-22 110.5 68 77.9
FvH4_4g08720 Fragaria vesca HOM05D004005 ORTHO05D004876 1.1e-22 110.5 83 73.5
AL7G24540 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 1.4e-22 110.2 83 72.3
MELO3C010189.2 Cucumis melo HOM05D004005 ORTHO05D004876 1.9e-22 109.8 83 71.1
FAN17G1822 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.9e-22 109.8 83 73.5
FAN22G1768 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.9e-22 109.8 83 73.5
Atru.chr7.422 Acer truncatum HOM05D004005 ORTHO05D004876 2.4e-22 109.4 80 68.8
Sed0005377 Sechium edule HOM05D004005 ORTHO05D004876 2.4e-22 109.4 83 71.1
TWI34G0830 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 2.4e-22 109.4 83 69.9
CsaV3_1G029280 Cucumis sativus L. HOM05D004005 ORTHO05D004876 3.2e-22 109.0 83 71.1
ECA240G0337 Erigeron canadensis HOM05D004005 ORTHO05D004876 3.2e-22 109.0 83 72.3
CARHR235770 Cardamine hirsuta HOM05D004005 ORTHO05D004876 4.2e-22 108.6 83 72.3
FAN12G2564 Fragaria x ananassa HOM05D004005 ORTHO05D004876 5.4e-22 108.2 83 72.3
FAN12G2633 Fragaria x ananassa HOM05D004005 ORTHO05D004876 5.4e-22 108.2 83 72.3
Actinidia33309 Actinidia chinensis HOM05D004005 ORTHO05D004876 7.1e-22 107.8 79 70.9
CSS0009484 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 9.3e-22 107.5 68 76.5
HPP92_000253 Vanilla planifolia HOM05D004005 ORTHO05D004876 2.7e-21 105.9 68 73.5
THA.LOC104819957 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 6.0e-21 104.8 83 63.9
SalBow6G1392 Salvia bowleyana HOM05D004005 ORTHO05D004876 7.8e-21 104.4 161 44.7
DCAR_020096 Daucus carota HOM05D004005 ORTHO05D004876 1.0e-20 104.0 68 73.5
FAN12G2076 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.7e-20 103.2 142 47.2
Aa31LG2G20040 Aethionema arabicum HOM05D004005 ORTHO05D004876 2.3e-20 102.8 83 65.1
MBI14_g43176_MAGBIO Magnolia biondii HOM05D004005 ORTHO05D004876 3.9e-20 102.1 77 70.1
EL10Ac8g18886 Beta vulgaris HOM05D004005 ORTHO05D004876 8.7e-20 100.9 139 47.5
Zm00001eb076820 Zea mays HOM05D004005 ORTHO05D004876 2.8e-18 95.9 79 64.6
Mapoly0020s0008 Marchantia polymorpha HOM05D004005 ORTHO05D004876 3.1e-17 92.4 160 35.0
SMO145G0222 Selaginella moellendorffii HOM05D004005 ORTHO05D004876 1.5e-16 90.1 83 61.4
Pp3c18_12420 Physcomitrium patens HOM05D004005 ORTHO05D004876 1.9e-14 83.2 81 53.1
CSS0036046 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.5e-08 63.5 36 75.0
Cre14.g619350 Chlamydomonas reinhardtii HOM05D004005 ORTHO05D004876 9.9e-08 60.8 153 30.7
CBR_g49493 Chara braunii HOM05D004005 ORTHO05D004876 2.2e-07 59.7 68 48.5
PRCOL_00006651 Prasinoderma coloniale HOM05D004005 ORTHO05D004876 1.9e-06 56.6 82 43.9


User provided reference genes

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