Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 3.9e-88 328.2 172 100.0
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.0e-48 197.2 160 71.2
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 8.4e-35 151.0 156 60.3
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 8.4e-35 151.0 156 60.3
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 4.6e-33 145.2 158 58.2
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.3e-32 143.7 153 58.2
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.4e-29 132.9 154 57.8
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.4e-29 132.9 157 54.8
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 2.4e-29 132.9 162 52.5
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.1e-29 132.1 154 58.4
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 1.5e-28 130.2 160 53.8
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 2.6e-28 129.4 155 52.9
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.7e-27 126.7 155 56.1
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 2.2e-27 126.3 153 53.6
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 3.8e-27 125.6 127 59.8
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.8e-27 125.6 158 53.2
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.1e-26 124.0 172 50.0
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 1.1e-26 124.0 150 55.3
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 3.2e-26 122.5 153 51.0
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 4.2e-26 122.1 154 54.5
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 9.3e-26 120.9 167 51.5
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 1.2e-25 120.6 156 51.3
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 2.1e-25 119.8 153 50.3
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.1e-25 119.8 155 48.4
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 2.1e-25 119.8 155 48.4
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 2.7e-25 119.4 166 50.0
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 4.6e-25 118.6 165 49.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.6e-25 118.6 155 47.7
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 6.1e-25 118.2 153 52.3
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.0e-24 117.5 155 51.0
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.3e-24 117.1 154 50.6
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 3.9e-24 115.5 156 54.5
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 5.1e-24 115.2 156 54.5
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 1.5e-23 113.6 181 43.1
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 2.5e-23 112.8 153 52.3
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 9.7e-23 110.9 157 48.4
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 2.8e-22 109.4 157 48.4
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 2.8e-22 109.4 153 51.6
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 3.7e-22 109.0 157 48.4
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 3.7e-22 109.0 153 51.6
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 4.8e-22 108.6 157 48.4
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 1.1e-21 107.5 161 47.2
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 1.8e-21 106.7 156 46.8
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 3.1e-21 105.9 163 46.6
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 3.1e-21 105.9 163 46.6
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 4.1e-21 105.5 162 46.9
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 9.1e-21 104.4 153 48.4
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 9.1e-21 104.4 153 48.4
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 9.1e-21 104.4 156 48.1
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.5e-20 103.6 153 47.7
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.5e-20 103.6 153 46.4
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.5e-20 103.6 148 48.6
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 1.5e-20 103.6 154 47.4
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 2.0e-20 103.2 158 46.2
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 2.0e-20 103.2 156 46.8
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 2.6e-20 102.8 155 47.1
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 2.6e-20 102.8 183 42.1
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 3.4e-20 102.4 156 46.8
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 3.4e-20 102.4 153 47.7
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 5.9e-20 101.7 146 48.6
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 1.0e-19 100.9 128 47.7
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.3e-19 100.5 157 46.5
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.3e-19 100.5 157 45.9
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.2e-19 99.8 154 44.8
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 2.2e-19 99.8 175 41.1
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 2.9e-19 99.4 155 43.9
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 3.8e-19 99.0 155 43.9
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 3.8e-19 99.0 136 48.5
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 3.8e-19 99.0 155 47.7
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 6.5e-19 98.2 96 57.3
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 8.5e-19 97.8 153 44.4
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.1e-18 97.4 153 44.4
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 1.1e-18 97.4 142 47.9
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.1e-18 97.4 157 45.9
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.4e-18 97.1 156 45.5
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.4e-18 97.1 160 49.4
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 1.4e-18 97.1 140 45.0
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 1.9e-18 96.7 156 45.5
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.9e-18 96.7 158 44.9
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 1.9e-18 96.7 153 45.1
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 3.2e-18 95.9 154 44.2
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 3.2e-18 95.9 154 44.2
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 3.2e-18 95.9 154 44.2
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 5.5e-18 95.1 180 41.1
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 5.5e-18 95.1 153 47.1
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 7.2e-18 94.7 164 44.5
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 7.2e-18 94.7 155 42.6
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 7.2e-18 94.7 153 46.4
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 1.2e-17 94.0 158 44.9
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.2e-17 94.0 158 45.6
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 1.2e-17 94.0 131 49.6
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 1.2e-17 94.0 215 39.5
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 2.1e-17 93.2 167 46.1
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 2.7e-17 92.8 153 42.5
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 4.7e-17 92.0 154 43.5
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.7e-17 92.0 153 43.1
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.7e-17 92.0 153 43.1
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 6.1e-17 91.7 156 44.2
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 6.1e-17 91.7 153 41.8
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 6.1e-17 91.7 160 43.8
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 7.9e-17 91.3 158 41.8
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 7.9e-17 91.3 82 63.4
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.0e-16 90.9 103 57.3
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.0e-16 90.9 153 44.4
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 1.4e-16 90.5 130 48.5
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.3e-16 89.7 158 43.7
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 3.0e-16 89.4 76 64.5
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 3.0e-16 89.4 165 43.0
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 3.0e-16 89.4 154 45.5
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 3.9e-16 89.0 160 43.8
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 2.6e-15 86.3 95 54.7
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 1.3e-14 84.0 153 39.2
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.7e-14 83.6 157 43.3
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 1.1e-13 80.9 79 62.0
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.1e-13 80.9 112 46.4
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 1.4e-13 80.5 78 56.4
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 1.2e-12 77.4 59 69.5
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 2.9e-11 72.8 154 40.3
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 5.0e-11 72.0 132 38.6
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 5.0e-11 72.0 108 45.4
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 1.4e-10 70.5 48 70.8
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 4.2e-10 68.9 139 41.7
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 4.7e-09 65.5 72 55.6
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 8.0e-09 64.7 139 38.1
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 8.0e-09 64.7 73 50.7
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.3e-08 63.2 81 46.9
Actinidia24378 Actinidia chinensis HOM05D004690 ORTHO05D005527 3.9e-08 62.4 102 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 5.2e-08 62.0 94 43.6
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 8.8e-08 61.2 115 41.7
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.1e-07 60.8 98 42.9
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 1.5e-07 60.5 61 52.5
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 1.3e-06 57.4 45 64.4
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 1.7e-06 57.0 46 60.9
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.7e-06 57.0 94 45.7
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 3.7e-06 55.8 37 73.0


User provided reference genes

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