Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0028F.1_g017540 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 6.2e-129 464.2 235 100.0
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 4.7e-52 208.8 231 53.2
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 3.0e-43 179.5 243 48.6
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 5.7e-42 175.3 241 46.9
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 1.7e-41 173.7 240 48.8
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 4.5e-39 165.6 242 45.0
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 1.3e-38 164.1 244 45.5
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 5.0e-38 162.2 244 46.3
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.6e-36 157.1 240 43.3
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 2.7e-36 156.4 240 43.3
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 4.0e-35 152.5 213 45.1
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 8.8e-35 151.4 240 42.5
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 1.2e-34 151.0 241 41.1
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 2.6e-34 149.8 241 40.7
FAN23G2562 Fragaria x ananassa HOM05D000344 ORTHO05D005296 7.5e-34 148.3 240 41.7
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 9.8e-34 147.9 244 41.0
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 1.7e-33 147.1 241 41.1
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 8.3e-33 144.8 243 41.2
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 1.1e-32 144.4 242 45.9
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 1.4e-32 144.1 239 43.1
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 1.4e-32 144.1 239 43.5
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 3.1e-32 142.9 241 42.7
Actinidia38328 Actinidia chinensis HOM05D000344 ORTHO05D005296 7.0e-32 141.7 227 44.1
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 1.2e-31 141.0 241 41.5
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 4.5e-31 139.0 236 41.1
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 7.7e-31 138.3 238 41.6
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 5.0e-30 135.6 240 41.2
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 5.0e-30 135.6 241 38.6
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 8.5e-30 134.8 265 39.2
CSS0027545 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D043344 2.5e-29 133.3 202 45.0
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 2.5e-29 133.3 234 40.2
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 4.7e-28 129.0 237 37.1
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 1.4e-27 127.5 239 42.3
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 1.4e-27 127.5 244 33.2
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 2.3e-27 126.7 247 41.3
TAR636G1075 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.5e-26 124.0 136 51.5
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 2.6e-26 123.2 216 39.4
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 2.6e-26 123.2 237 40.5
Lj9A682G44 Lonicera japonica HOM05D000344 ORTHO05D005296 4.4e-26 122.5 211 43.1
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 4.4e-26 122.5 237 40.5
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 9.8e-26 121.3 244 39.3
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 9.8e-26 121.3 228 39.0
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 2.2e-25 120.2 244 32.4
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 3.7e-25 119.4 245 33.9
GSVIVG01001910001 Vitis vinifera HOM05D000344 ORTHO05D005296 1.1e-24 117.9 117 57.3
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 2.4e-24 116.7 237 33.8
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 9.2e-24 114.8 223 38.1
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 9.2e-24 114.8 236 38.6
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 1.2e-23 114.4 151 44.4
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 1.2e-23 114.4 239 38.5
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 1.2e-23 114.4 239 39.3
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 2.0e-23 113.6 224 38.4
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 2.0e-23 113.6 223 39.0
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 2.7e-23 113.2 223 39.0
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 4.5e-23 112.5 233 40.3
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 5.9e-23 112.1 233 36.1
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 1.3e-22 110.9 227 36.6
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 1.7e-22 110.5 240 36.2
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 2.9e-22 109.8 235 38.7
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 2.9e-22 109.8 231 35.9
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 6.6e-22 108.6 151 42.4
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 8.6e-22 108.2 243 35.4
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.1e-21 107.8 223 39.5
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 1.5e-21 107.5 232 36.2
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 2.5e-21 106.7 224 35.7
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 4.3e-21 105.9 232 37.5
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 4.3e-21 105.9 233 39.1
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 5.6e-21 105.5 223 38.6
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 5.6e-21 105.5 243 36.2
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 9.5e-21 104.8 247 38.1
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 4.7e-20 102.4 223 38.1
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 1.0e-19 101.3 247 37.2
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 1.8e-19 100.5 213 36.6
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 2.3e-19 100.1 233 38.2
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.3e-19 100.1 213 36.2
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.2e-18 97.8 236 35.2
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 1.2e-18 97.8 242 36.8
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 2.6e-18 96.7 231 31.6
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.6e-18 96.7 238 34.9
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 3.4e-18 96.3 241 36.9
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 4.4e-18 95.9 229 33.6
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 4.4e-18 95.9 229 33.6
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 5.7e-18 95.5 229 35.4
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 7.5e-18 95.1 224 33.5
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 1.3e-17 94.4 211 37.4
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 1.7e-17 94.0 224 32.6
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 1.7e-17 94.0 224 32.6
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 2.9e-17 93.2 226 33.2
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 8.3e-17 91.7 220 33.6
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 1.1e-16 91.3 231 30.7
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.4e-16 90.1 213 35.2
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 3.2e-16 89.7 224 33.0
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 4.1e-16 89.4 226 32.7
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 5.4e-16 89.0 220 32.3
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 5.4e-16 89.0 217 32.7
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 3.5e-15 86.3 229 32.3
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 7.8e-15 85.1 246 32.1
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 7.8e-15 85.1 169 39.6
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 1.3e-14 84.3 228 30.3
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 1.7e-14 84.0 228 31.1
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 3.9e-14 82.8 200 33.0
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 3.9e-14 82.8 200 33.0
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 5.0e-14 82.4 225 32.9
TPR.G8014 Trifolium pratense HOM05D000344 ORTHO05D005296 5.0e-14 82.4 76 52.6
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 8.6e-14 81.6 231 31.2
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 1.1e-13 81.3 160 34.4
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 1.9e-13 80.5 188 35.6
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 3.3e-13 79.7 112 40.2
Lsat_1_v5_gn_5_91020 Lactuca sativa HOM05D000344 ORTHO05D005296 5.6e-13 79.0 226 30.1
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 9.5e-13 78.2 203 27.6
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 1.6e-12 77.4 65 61.5
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 3.6e-12 76.3 124 37.1
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 1.0e-11 74.7 164 34.1
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 2.3e-11 73.6 235 28.1
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 3.1e-11 73.2 235 27.7
unitig_8.g3634 Utricularia gibba HOM05D000344 ORTHO05D005296 8.9e-11 71.6 89 43.8
SHI02820 Sapria himalayana HOM05D000344 ORTHO05D005296 9.8e-10 68.2 74 44.6
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 2.2e-09 67.0 221 32.1
HPP92_010393 Vanilla planifolia HOM05D000344 ORTHO05D014129 2.2e-09 67.0 214 34.6
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 6.4e-09 65.5 216 29.2
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 5.4e-08 62.4 100 43.0
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 9.2e-08 61.6 227 26.9
PSO732G0388 Papaver somniferum HOM05D000344 ORTHO05D005296 1.3e-06 57.8 221 29.4
CSS0016122 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.3e-06 57.0 42 69.0
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 2.3e-06 57.0 213 29.6
SEGI_32126 Sequoiadendron giganteum HOM05D000344 ORTHO05D005296 8.6e-06 55.1 120 32.5


User provided reference genes

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