Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.1e-219 765.4 385 100.0
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.6e-166 589.7 389 78.7
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.6e-158 561.6 386 75.4
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.6e-158 561.6 397 74.3
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.3e-157 559.3 397 73.8
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.6e-153 545.8 380 72.9
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 3.9e-149 531.9 379 73.6
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 6.7e-149 531.2 364 75.0
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 9.7e-148 527.3 386 71.2
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.7e-147 526.6 384 72.1
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 3.2e-143 512.3 388 69.1
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 3.0e-141 505.8 387 69.5
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 7.4e-140 501.1 387 66.7
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 9.7e-140 500.7 399 68.4
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.8e-138 496.5 391 69.8
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 5.0e-136 488.4 384 69.0
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 6.5e-136 488.0 387 69.0
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 8.5e-136 487.6 383 67.1
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.1e-135 487.3 390 67.7
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 5.5e-135 485.0 391 68.3
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 2.7e-134 482.6 396 66.7
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 3.6e-134 482.3 396 66.7
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 6.1e-134 481.5 384 68.0
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 8.0e-134 481.1 389 65.3
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 3.0e-133 479.2 385 65.7
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 4.0e-133 478.8 396 66.4
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.2e-132 477.2 384 66.7
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.2e-132 477.2 384 66.1
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.0e-132 476.5 389 66.8
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.0e-132 476.5 391 67.0
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 5.7e-132 474.9 389 67.6
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 9.7e-132 474.2 381 65.6
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 2.2e-131 473.0 388 66.5
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.4e-130 469.5 385 67.3
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 5.3e-130 468.4 379 67.3
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.0e-130 468.0 385 66.8
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 7.0e-130 468.0 377 67.1
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 2.0e-129 466.5 387 65.4
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 5.9e-129 464.9 390 65.4
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 1.7e-128 463.4 380 67.6
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.7e-128 463.4 379 64.4
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.7e-128 463.4 378 64.3
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 2.2e-128 463.0 389 64.5
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 2.9e-128 462.6 392 66.1
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 3.8e-128 462.2 377 67.1
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 8.5e-128 461.1 387 65.6
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 1.0e-125 454.1 393 64.9
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 6.8e-125 451.4 388 62.9
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 1.5e-124 450.3 382 64.7
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 5.7e-124 448.4 388 63.9
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 7.5e-124 448.0 382 64.1
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 9.8e-124 447.6 392 62.5
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 2.2e-123 446.4 397 62.5
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 3.7e-123 445.7 395 62.5
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 8.3e-123 444.5 389 62.2
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.4e-122 443.0 378 62.7
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 3.1e-122 442.6 393 63.9
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 3.1e-122 442.6 381 63.0
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 7.0e-122 441.4 380 63.7
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.0e-121 439.9 379 62.5
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 2.0e-121 439.9 368 64.9
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.5e-121 439.1 379 62.8
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 3.5e-121 439.1 395 62.3
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 4.5e-121 438.7 346 67.9
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 5.9e-121 438.3 344 69.5
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 7.7e-121 438.0 377 62.6
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 7.7e-121 438.0 379 65.2
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.9e-120 436.0 392 61.0
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.9e-120 436.0 386 62.4
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 1.9e-119 433.3 387 62.8
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 5.5e-119 431.8 356 67.7
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 5.5e-119 431.8 356 67.7
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 5.5e-119 431.8 386 62.4
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 4.7e-118 428.7 378 61.4
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 1.8e-117 426.8 393 61.3
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 2.3e-117 426.4 393 61.3
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 2.2e-115 419.9 392 59.7
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 4.1e-114 415.6 390 58.2
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 6.6e-112 408.3 390 57.4
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 2.5e-111 406.4 382 61.3
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 3.3e-111 406.0 392 57.4
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.6e-110 403.7 357 62.2
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 4.4e-108 395.6 383 59.3
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 5.7e-108 395.2 381 59.1
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 9.8e-108 394.4 383 59.0
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 9.8e-108 394.4 381 58.8
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 2.9e-107 392.9 381 58.8
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 6.4e-107 391.7 383 58.5
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 3.2e-106 389.4 388 56.2
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 5.4e-106 388.7 382 57.6
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 2.0e-105 386.7 399 55.1
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 2.7e-105 386.3 380 58.2
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 4.6e-105 385.6 388 57.5
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.0e-104 384.4 384 57.6
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 1.0e-104 384.4 382 58.4
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.0e-104 384.4 379 57.3
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 1.3e-104 384.0 380 56.6
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 1.3e-104 384.0 384 57.3
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 3.0e-104 382.9 382 58.1
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.9e-103 380.2 384 57.8
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 4.3e-103 379.0 382 56.8
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 7.3e-103 378.3 382 55.2
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 9.5e-103 377.9 382 57.9
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 9.5e-103 377.9 381 57.7
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 1.2e-102 377.5 284 69.7
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 3.4e-100 369.4 379 55.9
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 5.8e-100 368.6 389 57.1
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 9.2e-98 361.3 359 53.8
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 2.7e-97 359.8 377 54.1
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.3e-91 340.9 320 57.5
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 8.6e-88 328.2 297 63.0
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 1.1e-87 327.8 387 48.3
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 8.1e-86 321.6 408 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.4e-84 315.8 378 46.3
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.8e-83 312.8 289 60.9
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.9e-79 300.4 328 51.8
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 4.9e-75 285.8 254 59.1
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 9.3e-74 281.6 169 82.2
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 7.1e-66 255.4 359 42.1
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.5e-63 246.9 296 51.7
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 5.6e-63 245.7 296 51.4
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 1.3e-54 218.0 226 55.8
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 1.5e-52 211.1 192 60.4
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 9.7e-47 191.8 359 39.6
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 9.7e-47 191.8 189 59.8
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.9e-39 167.5 265 40.0
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.8e-37 161.0 144 64.6
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.9e-35 153.7 139 54.7
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 6.1e-33 146.0 167 53.3
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 5.7e-31 139.4 82 78.0
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.8e-30 136.3 185 44.9
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.4e-29 134.0 296 32.8
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 5.5e-26 122.9 93 66.7
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.5e-23 114.8 111 51.4
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 3.3e-15 87.0 66 60.6
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 3.1e-13 80.5 106 42.5
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 7.7e-12 75.9 158 29.1
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.5e-10 71.6 56 69.6
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 2.5e-10 70.9 273 23.1
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 5.5e-10 69.7 246 26.0
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.2e-09 68.6 70 54.3
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.2e-09 68.6 78 53.8
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 2.7e-09 67.4 41 70.7
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.3e-06 58.5 165 30.3
unitig_0.g2818 Utricularia gibba HOM05D002170 ORTHO05D005003 8.3e-06 55.8 80 40.0


User provided reference genes

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