Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 1.5e-83 312.8 158 100.0
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 5.9e-59 231.1 158 73.4
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 4.2e-57 224.9 156 74.4
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 9.4e-57 223.8 158 73.4
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 2.3e-55 219.2 152 71.7
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 2.3e-55 219.2 158 70.3
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 4.0e-55 218.4 151 68.2
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 5.7e-54 214.5 160 68.1
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 4.8e-53 211.5 158 66.5
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 6.3e-53 211.1 145 73.1
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 3.1e-52 208.8 158 67.7
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 7.0e-52 207.6 158 67.7
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 9.1e-52 207.2 147 70.7
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 1.6e-51 206.5 155 68.4
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 2.0e-51 206.1 159 66.7
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.7e-51 205.7 154 66.2
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 4.5e-51 204.9 151 66.2
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 4.5e-51 204.9 151 70.2
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 7.7e-51 204.1 131 78.6
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.7e-50 203.0 158 65.8
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 1.7e-50 203.0 152 67.8
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.7e-50 203.0 154 65.6
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 2.2e-50 202.6 152 66.4
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 2.2e-50 202.6 154 64.9
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 2.9e-50 202.2 154 64.9
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 6.5e-50 201.1 158 65.2
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 8.5e-50 200.7 159 66.0
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.5e-49 199.9 156 66.0
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.9e-49 199.5 151 64.9
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.9e-49 199.5 133 74.4
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 2.5e-49 199.1 154 68.2
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 2.5e-49 199.1 154 63.6
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 4.2e-49 198.4 145 69.7
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 5.5e-49 198.0 158 65.2
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.2e-48 196.8 158 63.9
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.2e-48 196.8 142 69.7
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 1.2e-48 196.8 147 68.7
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 1.6e-48 196.4 154 63.0
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 2.1e-48 196.1 148 67.6
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 6.1e-48 194.5 151 66.9
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.3e-47 192.6 127 74.0
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 2.3e-47 192.6 124 76.6
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 3.0e-47 192.2 149 65.1
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 5.2e-47 191.4 154 66.9
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 5.2e-47 191.4 154 64.9
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 5.2e-47 191.4 125 75.2
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 6.8e-47 191.0 158 62.7
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 8.8e-47 190.7 151 64.9
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 1.2e-46 190.3 156 60.9
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 1.2e-46 190.3 150 64.7
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.0e-46 189.5 149 65.1
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 2.6e-46 189.1 148 68.2
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.6e-46 189.1 130 70.0
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 3.4e-46 188.7 150 62.7
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 3.4e-46 188.7 149 65.8
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.4e-46 188.3 155 64.5
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 5.7e-46 188.0 156 63.5
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 5.7e-46 188.0 137 68.6
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 7.5e-46 187.6 151 60.9
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 7.5e-46 187.6 129 73.6
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 9.8e-46 187.2 151 64.2
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 9.8e-46 187.2 151 64.2
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 9.8e-46 187.2 158 62.7
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 1.3e-45 186.8 124 74.2
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 1.3e-45 186.8 158 61.4
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 1.7e-45 186.4 125 71.2
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.7e-45 186.4 152 65.1
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 3.7e-45 185.3 153 61.4
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 4.8e-45 184.9 140 66.4
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 8.3e-45 184.1 153 63.4
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 2.4e-44 182.6 152 61.8
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 5.4e-44 181.4 128 70.3
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 5.4e-44 181.4 156 61.5
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 5.4e-44 181.4 131 70.2
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 7.0e-44 181.0 145 64.1
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 9.1e-44 180.6 151 62.9
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.2e-43 180.3 159 59.7
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 2.7e-43 179.1 151 62.3
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 2.2e-42 176.0 150 60.7
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 3.8e-42 175.3 153 59.5
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 8.5e-42 174.1 156 58.3
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 1.5e-41 173.3 132 65.2
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.9e-41 172.9 143 65.7
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 2.5e-41 172.6 125 67.2
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 2.5e-41 172.6 125 72.0
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.2e-41 172.2 155 59.4
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 3.2e-41 172.2 124 67.7
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 7.2e-41 171.0 131 67.9
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 2.7e-40 169.1 128 66.4
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.6e-40 168.7 125 70.4
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 3.6e-40 168.7 124 66.1
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 4.7e-40 168.3 125 69.6
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 1.8e-39 166.4 119 65.5
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 3.0e-39 165.6 133 67.7
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 5.7e-38 161.4 119 63.0
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 9.8e-38 160.6 149 59.1
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.7e-37 159.8 133 65.4
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 1.1e-36 157.1 124 63.7
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 1.4e-36 156.8 132 57.6
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 4.1e-36 155.2 125 63.2
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 9.2e-36 154.1 124 62.9
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 2.0e-35 152.9 131 60.3
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 2.7e-35 152.5 158 53.2
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 3.5e-35 152.1 127 62.2
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 2.1e-32 142.9 141 55.3
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 7.0e-28 127.9 123 52.0
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 7.8e-27 124.4 103 60.2
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.0e-26 124.0 141 48.9
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 1.3e-26 123.6 124 48.4
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 3.0e-26 122.5 141 48.2
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 1.9e-25 119.8 86 68.6
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 1.6e-24 116.7 132 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 2.8e-24 115.9 142 47.9
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 4.9e-21 105.1 107 51.4
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 3.2e-20 102.4 126 44.4
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 6.0e-19 98.2 111 50.5
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 1.0e-18 97.4 127 44.1
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 4.3e-17 92.0 96 55.2
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 2.8e-16 89.4 110 41.8
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 2.8e-16 89.4 80 48.8
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 2.0e-14 83.2 150 36.0
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 5.8e-14 81.6 120 42.5
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 7.1e-12 74.7 58 67.2
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.4e-07 60.5 122 37.7


User provided reference genes

Program Settings