Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 4.8e-27 123.6 57 100.0
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.7e-24 115.2 54 96.3
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 8.4e-24 112.8 55 92.7
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 5.5e-23 110.2 53 92.5
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 9.3e-23 109.4 54 90.7
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.2e-22 109.0 54 88.9
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 1.6e-22 108.6 54 87.0
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 1.6e-22 108.6 56 85.7
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 2.1e-22 108.2 54 90.7
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 2.1e-22 108.2 54 90.7
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 2.7e-22 107.8 54 88.9
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 2.7e-22 107.8 54 87.0
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.5e-22 107.5 57 82.5
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 3.5e-22 107.5 54 88.9
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.6e-22 107.1 53 90.6
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 4.6e-22 107.1 54 88.9
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 6.0e-22 106.7 53 88.7
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.3e-21 105.5 54 87.0
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.3e-21 105.5 56 85.7
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.3e-21 105.5 56 85.7
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 1.3e-21 105.5 54 87.0
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 2.3e-21 104.8 54 87.0
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 3.0e-21 104.4 54 87.0
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 3.9e-21 104.0 57 78.9
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 5.1e-21 103.6 54 81.5
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.1e-21 103.6 56 82.1
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 6.7e-21 103.2 54 85.2
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 8.7e-21 102.8 53 86.8
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 8.7e-21 102.8 54 83.3
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 8.7e-21 102.8 54 83.3
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 8.7e-21 102.8 54 85.2
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.7e-21 102.8 53 88.7
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 8.7e-21 102.8 53 86.8
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 8.7e-21 102.8 53 86.8
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.1e-20 102.4 54 83.3
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.1e-20 102.4 53 84.9
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.1e-20 102.4 53 84.9
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.1e-20 102.4 53 84.9
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 1.1e-20 102.4 53 83.0
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 1.1e-20 102.4 54 85.2
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 1.5e-20 102.1 54 83.3
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 1.5e-20 102.1 54 81.5
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 1.9e-20 101.7 53 84.9
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 1.9e-20 101.7 53 84.9
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 3.3e-20 100.9 53 81.1
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 4.3e-20 100.5 52 84.6
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 7.4e-20 99.8 54 79.6
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.3e-19 99.0 54 85.2
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.3e-19 99.0 54 85.2
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.3e-19 99.0 54 83.3
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.8e-19 97.8 53 83.0
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.8e-19 97.8 54 83.3
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 4.8e-19 97.1 52 86.5
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 4.8e-19 97.1 52 82.7
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 4.8e-19 97.1 53 81.1
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 6.3e-19 96.7 54 83.3
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 8.2e-19 96.3 54 79.6
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 8.2e-19 96.3 54 79.6
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.1e-18 95.9 54 77.8
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.1e-18 95.9 54 77.8
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 1.1e-18 95.9 54 79.6
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 1.1e-18 95.9 54 79.6
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 1.1e-18 95.9 54 77.8
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 1.1e-18 95.9 52 82.7
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 1.4e-18 95.5 53 81.1
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 2.4e-18 94.7 53 79.2
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.1e-18 94.4 54 81.5
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 3.1e-18 94.4 54 79.6
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.1e-18 94.0 53 83.0
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 5.3e-18 93.6 55 81.8
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 1.2e-17 92.4 53 77.4
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 2.6e-17 91.3 50 78.0
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 2.6e-17 91.3 50 78.0
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 2.6e-17 91.3 54 75.9
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 3.4e-17 90.9 54 74.1
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 3.4e-17 90.9 50 82.0
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.7e-16 88.6 53 79.2
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 2.9e-16 87.8 48 79.2
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.1e-15 85.9 49 77.6
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 2.5e-15 84.7 55 72.7
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.2e-15 84.3 54 74.1
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.2e-15 84.3 54 74.1
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.2e-15 84.3 95 49.5
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 3.2e-15 84.3 56 71.4
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 4.2e-15 84.0 54 74.1
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 5.5e-15 83.6 54 74.1
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 9.3e-15 82.8 54 77.8
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 9.3e-15 82.8 49 73.5
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.1e-14 81.6 53 73.6
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 3.6e-14 80.9 54 74.1
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 4.6e-14 80.5 54 72.2
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 1.8e-13 78.6 50 74.0
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 1.8e-13 78.6 54 74.1
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 6.7e-13 76.6 50 70.0
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 8.8e-13 76.3 50 66.0
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.9e-12 75.1 87 48.3
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 2.5e-12 74.7 54 70.4
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 4.8e-11 70.5 51 70.6
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.8e-10 68.6 42 69.0
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 3.1e-10 67.8 54 57.4
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 5.3e-10 67.0 36 80.6
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.1e-10 66.2 31 93.5
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.5e-09 63.9 31 90.3
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.3e-08 62.4 79 46.8
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.3e-08 62.4 79 46.8
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 2.2e-08 61.6 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 3.8e-08 60.8 28 92.9
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 6.5e-08 60.1 31 80.6
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 1.1e-07 59.3 44 56.8
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 2.5e-07 58.2 36 72.2
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.5e-07 58.2 31 83.9
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 5.5e-07 57.0 40 65.0
MD12G1007100 Malus domestica HOM05D006514 ORTHO05D008138 1.6e-06 55.5 34 73.5
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 7.9e-06 53.1 31 67.7


User provided reference genes

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