Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 8.4e-137 490.3 245 100.0
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 7.9e-95 350.9 234 77.8
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.0e-65 254.2 239 58.6
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 4.0e-62 242.3 245 55.1
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.8e-62 241.1 241 56.0
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.0e-61 240.0 241 55.6
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.2e-60 236.5 248 55.2
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.9e-57 226.1 242 53.7
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.9e-57 226.1 244 52.0
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 5.0e-57 225.3 246 48.8
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-56 223.4 244 51.6
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.5e-56 221.9 244 51.6
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 5.5e-56 221.9 251 53.0
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 1.6e-55 220.3 211 59.7
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 2.8e-55 219.5 239 52.3
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 1.8e-54 216.9 244 53.7
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 2.3e-54 216.5 242 52.5
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 3.0e-54 216.1 242 52.1
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.5e-53 213.8 245 50.6
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.7e-52 210.3 246 49.2
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 3.7e-52 209.1 245 48.2
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 4.9e-52 208.8 241 50.2
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.3e-52 208.4 244 50.8
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 5.9e-50 201.8 246 50.0
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.3e-49 200.7 237 50.2
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 5.6e-48 195.3 248 46.4
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.2e-47 194.1 247 47.8
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.6e-47 193.7 245 48.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.6e-47 193.7 247 51.0
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.6e-47 193.7 247 48.6
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 6.1e-47 191.8 263 47.5
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.0e-46 191.0 252 46.8
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.4e-45 185.7 252 46.4
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 4.4e-45 185.7 246 47.2
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 9.8e-45 184.5 258 43.4
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 3.7e-44 182.6 245 43.3
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.7e-44 182.6 242 48.8
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 4.9e-44 182.2 259 45.6
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 6.4e-44 181.8 242 47.1
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.4e-43 180.6 246 48.8
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.2e-42 177.6 249 46.2
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 4.6e-42 175.6 247 48.2
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 4.6e-42 175.6 270 46.7
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.0e-41 174.5 242 47.5
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.3e-41 174.1 251 44.6
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.3e-41 173.3 248 48.8
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.5e-40 170.6 248 48.4
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.9e-40 170.2 248 48.4
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 3.3e-40 169.5 264 43.6
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.3e-40 169.5 244 45.5
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.3e-40 169.1 245 48.2
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 7.3e-40 168.3 258 46.5
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 7.3e-40 168.3 260 47.7
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 7.3e-40 168.3 267 44.6
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.2e-39 167.5 237 44.7
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.6e-39 166.0 242 45.5
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 3.6e-39 166.0 239 44.4
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.7e-39 165.6 243 46.9
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 6.2e-39 165.2 243 48.1
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.4e-38 164.1 259 44.0
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 1.8e-38 163.7 251 46.2
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.1e-38 162.9 245 47.8
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 4.0e-38 162.5 260 44.2
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.5e-37 160.6 243 44.4
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.3e-36 157.5 216 45.4
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 2.2e-36 156.8 237 42.2
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 2.9e-36 156.4 242 40.9
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.7e-36 156.0 246 42.3
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.9e-36 155.6 242 41.7
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 6.4e-36 155.2 223 47.1
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 5.4e-35 152.1 228 41.7
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 2.7e-34 149.8 241 41.9
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 7.8e-34 148.3 247 41.3
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 5.0e-33 145.6 248 41.9
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 8.6e-33 144.8 240 43.3
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 8.6e-33 144.8 224 45.5
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 7.3e-32 141.7 236 41.1
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 2.1e-31 140.2 253 41.1
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 3.6e-31 139.4 239 38.1
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.8e-30 137.1 250 39.2
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.7e-28 130.6 236 38.6
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.9e-28 129.0 240 36.7
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.9e-28 129.0 246 37.0
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.4e-28 128.6 240 36.7
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 8.3e-28 128.3 240 36.7
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.1e-27 125.9 247 37.2
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 5.4e-27 125.6 252 36.9
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.1e-26 123.6 254 37.8
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 6.0e-26 122.1 258 38.4
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 7.8e-26 121.7 257 38.5
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 2.3e-25 120.2 246 37.4
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 3.0e-25 119.8 255 36.9
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.5e-24 117.5 247 36.8
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.3e-24 116.3 250 37.2
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 3.3e-24 116.3 251 36.3
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.6e-23 114.0 247 38.5
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 8.1e-23 111.7 253 36.8
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.1e-22 111.3 253 37.2
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-22 111.3 126 46.0
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.4e-22 110.9 253 37.2
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.8e-22 110.5 124 48.4
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 1.8e-22 110.5 123 46.3
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 3.1e-22 109.8 237 36.3
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 5.2e-22 109.0 252 34.9
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 6.8e-22 108.6 123 45.5
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 5.8e-21 105.5 252 36.5
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-20 104.4 126 44.4
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.3e-20 104.4 245 37.1
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.2e-20 103.6 210 38.1
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 2.2e-20 103.6 253 36.4
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 2.2e-20 103.6 246 35.8
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 3.8e-20 102.8 242 36.0
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 4.9e-20 102.4 248 34.3
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-19 100.5 90 53.3
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-19 100.5 106 50.0
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.9e-19 100.5 254 32.7
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 3.2e-19 99.8 236 32.6
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 7.1e-19 98.6 250 34.0
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 7.1e-19 98.6 243 36.2
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 9.2e-19 98.2 241 33.2
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 1.2e-18 97.8 254 33.1
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 1.3e-17 94.4 243 34.6
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 6.6e-17 92.0 254 33.1
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.5e-16 90.9 232 29.7
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.3e-16 89.7 249 33.7
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 3.3e-16 89.7 232 29.3
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-15 87.8 89 49.4
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 1.6e-15 87.4 246 31.3
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 2.1e-15 87.0 244 31.6
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 2.8e-15 86.7 87 50.6
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 4.7e-15 85.9 269 30.1
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.1e-14 84.7 255 31.0
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.1e-14 84.7 255 31.0
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 1.1e-14 84.7 247 30.0
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.4e-14 84.3 254 31.1
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 2.6e-13 80.1 265 28.7
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 5.8e-13 79.0 180 34.4
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 9.9e-13 78.2 229 33.2
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 2.2e-12 77.0 110 46.4
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 3.8e-12 76.3 234 31.6
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 2.4e-11 73.6 217 30.0
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.2e-11 73.2 219 32.0
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 4.2e-11 72.8 175 32.6
Peaxi162Scf47975g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-10 71.2 103 40.8
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.6e-10 70.9 217 29.0
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 3.0e-09 66.6 186 33.3
Glyma.06G078900 Glycine max HOM05D027503 ORTHO05D005506 2.8e-07 60.1 121 37.2
Peaxi162Scf00075g00074 Petunia axillaris HOM05D005081 ORTHO05D005506 6.2e-07 58.9 92 40.2
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 5.3e-06 55.8 133 37.6


User provided reference genes

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