Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.5e-36 155.6 76 100.0
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 2.0e-25 118.6 71 81.7
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 2.7e-25 118.2 71 83.1
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 6.0e-25 117.1 58 98.3
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.5e-23 112.5 74 74.3
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.9e-23 112.1 71 77.5
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 2.1e-22 108.6 68 80.9
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 2.1e-22 108.6 71 74.6
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 4.7e-22 107.5 68 79.4
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 6.2e-22 107.1 68 76.5
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 6.2e-22 107.1 68 76.5
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 8.1e-22 106.7 68 77.9
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 2.3e-21 105.1 73 72.6
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 2.3e-21 105.1 67 74.6
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 2.3e-21 105.1 69 76.8
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.1e-21 104.8 68 76.5
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 4.0e-21 104.4 73 67.1
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 4.0e-21 104.4 67 74.6
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 5.2e-21 104.0 71 70.4
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 1.2e-20 102.8 74 64.9
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 2.6e-20 101.7 70 70.0
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 3.4e-20 101.3 68 72.1
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 5.8e-20 100.5 66 72.7
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 7.5e-20 100.1 68 73.5
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.3e-19 99.4 68 70.6
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.7e-19 99.0 76 69.7
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.7e-19 99.0 67 68.7
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 2.9e-19 98.2 68 72.1
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 3.7e-19 97.8 71 64.8
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.7e-19 97.8 68 70.6
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.7e-19 97.8 68 70.6
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 3.7e-19 97.8 70 67.1
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 4.9e-19 97.4 68 67.6
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 4.9e-19 97.4 68 69.1
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 6.4e-19 97.1 67 71.6
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 1.4e-18 95.9 67 70.1
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.4e-18 95.9 70 67.1
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.9e-18 95.5 67 70.1
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.9e-18 95.5 70 67.1
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.9e-18 95.5 67 70.1
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 2.4e-18 95.1 66 68.2
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 2.4e-18 95.1 64 73.4
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 3.2e-18 94.7 72 63.9
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 3.2e-18 94.7 71 64.8
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 3.2e-18 94.7 70 65.7
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 4.1e-18 94.4 67 68.7
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 4.1e-18 94.4 67 71.6
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 5.4e-18 94.0 67 68.7
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 7.1e-18 93.6 69 66.7
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 9.2e-18 93.2 72 59.7
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 9.2e-18 93.2 66 68.2
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 1.6e-17 92.4 67 68.7
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 1.6e-17 92.4 67 68.7
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 1.6e-17 92.4 67 68.7
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.6e-17 92.4 67 68.7
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 2.1e-17 92.0 68 69.1
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 2.1e-17 92.0 64 68.8
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 2.1e-17 92.0 71 66.2
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 2.1e-17 92.0 64 70.3
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.1e-17 92.0 70 64.3
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.1e-17 92.0 70 64.3
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.1e-17 92.0 70 64.3
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.1e-17 92.0 70 62.9
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 2.7e-17 91.7 67 65.7
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 3.5e-17 91.3 70 64.3
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.6e-17 90.9 56 76.8
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 6.0e-17 90.5 67 62.7
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 6.0e-17 90.5 68 67.6
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 6.0e-17 90.5 55 78.2
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 7.8e-17 90.1 68 66.2
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 7.8e-17 90.1 67 64.2
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 1.7e-16 89.0 66 66.7
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 2.3e-16 88.6 67 67.2
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.3e-16 88.6 68 66.2
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 5.1e-16 87.4 73 60.3
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 6.6e-16 87.0 67 65.7
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 6.6e-16 87.0 71 60.6
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 6.6e-16 87.0 65 66.2
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 8.6e-16 86.7 67 65.7
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.6e-16 86.7 60 68.3
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 8.6e-16 86.7 67 64.2
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 1.1e-15 86.3 67 64.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.1e-15 86.3 71 62.0
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.5e-15 85.9 70 62.9
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.5e-15 85.9 52 78.8
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 3.3e-15 84.7 68 67.6
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 7.3e-15 83.6 67 62.7
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 1.6e-14 82.4 56 69.6
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 2.8e-14 81.6 68 61.8
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 4.7e-14 80.9 49 75.5
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 1.1e-13 79.7 67 59.7
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 6.8e-13 77.0 62 61.3
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 1.2e-12 76.3 62 59.7
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 1.2e-12 76.3 62 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 5.8e-12 73.9 52 67.3
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 5.8e-12 73.9 54 59.3
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 4.9e-11 70.9 60 55.0
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 6.4e-11 70.5 43 81.4
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 3.5e-09 64.7 69 52.2
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.1e-08 60.8 33 81.8
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.1e-07 59.7 52 51.9
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 3.6e-06 54.7 36 69.4


User provided reference genes

Program Settings