Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.8e-140 501.5 256 100.0
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.8e-140 501.5 256 100.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.3e-87 327.0 278 63.3
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.2e-82 310.5 278 61.5
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.2e-63 246.5 264 52.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.4e-63 245.0 264 51.9
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 8.3e-63 244.6 269 53.5
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.1e-62 244.2 298 49.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.9e-62 243.4 281 53.0
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.1e-62 242.3 298 49.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.0e-61 238.4 321 47.7
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 6.0e-61 238.4 292 52.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.9e-60 235.7 299 47.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.5e-59 233.8 321 45.5
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.5e-59 233.8 286 49.0
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.5e-59 233.8 304 48.7
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.5e-59 233.0 295 48.5
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.5e-59 231.1 273 50.9
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-58 230.7 273 50.5
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.8e-58 229.6 273 50.5
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.6e-58 229.2 277 48.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 2.4e-57 226.5 294 50.7
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.1e-57 226.1 319 44.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.1e-57 226.1 318 45.3
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 5.2e-57 225.3 316 45.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.2e-56 224.2 332 43.4
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.4e-56 222.6 273 49.8
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.7e-55 220.3 306 45.4
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.4e-54 217.2 306 45.1
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.9e-54 216.9 312 44.6
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 5.4e-54 215.3 281 46.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.1e-53 213.4 319 43.3
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.3e-52 210.7 307 45.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 3.0e-52 209.5 312 43.6
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 3.0e-52 209.5 319 42.3
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.3e-51 206.1 302 44.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 4.3e-51 205.7 329 39.5
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 4.3e-51 205.7 316 42.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.2e-50 204.1 319 42.3
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.6e-50 202.6 319 42.0
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.6e-50 202.6 302 44.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.1e-49 201.1 281 45.9
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.8e-49 200.3 297 44.1
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-49 199.9 299 43.8
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.9e-49 198.4 315 42.5
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 9.0e-49 198.0 281 45.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.0e-48 196.8 299 43.5
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.7e-47 193.7 312 41.0
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.9e-47 192.2 292 45.2
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.9e-47 192.2 313 43.1
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.4e-47 191.8 323 39.6
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 8.4e-47 191.4 299 43.5
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.2e-46 189.5 299 42.8
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 9.3e-46 188.0 284 42.3
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.6e-45 187.2 295 43.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 4.6e-45 185.7 305 40.0
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 7.8e-45 184.9 322 40.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.7e-44 183.7 260 44.2
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.3e-44 183.3 278 42.8
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.3e-44 183.3 263 43.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.1e-43 181.0 268 42.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 7.3e-43 178.3 256 45.3
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.3e-43 178.3 277 42.6
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-42 177.6 322 40.4
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 4.8e-42 175.6 277 45.1
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 4.8e-42 175.6 264 43.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 5.3e-41 172.2 290 40.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 6.9e-41 171.8 269 42.8
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.2e-40 171.0 253 42.3
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.6e-40 169.9 295 41.7
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 7.6e-40 168.3 273 40.7
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.7e-39 167.2 351 36.2
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.9e-39 166.4 268 41.0
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.4e-39 165.2 279 39.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.4e-39 164.9 262 43.1
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.9e-38 163.7 286 38.1
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 4.2e-38 162.5 315 36.8
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 7.1e-38 161.8 258 41.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.2e-37 161.0 261 42.9
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.3e-36 156.8 269 38.3
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.9e-36 156.0 323 34.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.9e-35 153.7 300 35.3
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 9.6e-35 151.4 266 38.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.3e-34 151.0 253 37.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.1e-34 150.2 253 39.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.8e-34 149.1 253 38.3
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.8e-34 149.1 273 39.9
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 8.1e-34 148.3 264 40.2
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.5e-32 144.1 298 37.6
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.4e-32 142.9 320 32.8
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 5.8e-32 142.1 259 39.4
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 5.8e-32 142.1 259 39.4
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 7.6e-32 141.7 259 39.4
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 7.6e-32 141.7 340 34.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.3e-31 141.0 267 38.2
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 6.4e-31 138.7 265 37.7
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.2e-30 136.0 274 36.9
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.1e-30 135.2 261 42.9
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 6.0e-29 132.1 249 39.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.5e-27 126.7 270 35.9
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 3.3e-27 126.3 290 36.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 4.3e-27 125.9 270 35.9
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 5.6e-27 125.6 260 36.2
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.8e-26 123.2 323 31.6
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-25 120.9 319 33.5
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 3.1e-25 119.8 256 34.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.3e-25 119.0 326 33.4
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.0e-23 114.8 260 37.7
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.2e-23 113.6 321 32.1
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.5e-22 109.0 280 32.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 7.1e-22 108.6 240 36.2
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.2e-21 107.8 240 36.2
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.9e-21 105.1 319 31.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.9e-20 102.8 257 37.7
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 6.7e-20 102.1 87 59.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.1e-19 101.3 269 32.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.5e-19 100.9 256 30.9
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.7e-19 98.2 391 27.9
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.6e-18 97.4 263 33.8
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.8e-18 96.7 250 33.2
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.8e-18 96.7 265 30.6
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.7e-18 96.3 258 33.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.8e-17 94.0 290 30.3
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.4e-17 93.6 268 35.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.4e-17 93.6 162 38.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.1e-17 92.8 285 32.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 4.1e-17 92.8 100 50.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.3e-17 92.4 319 28.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-16 91.3 86 51.2
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 3.4e-16 89.7 262 32.1
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.0e-15 88.2 268 32.8
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.7e-15 87.4 323 29.7
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.2e-15 87.0 107 45.8
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.9e-15 86.7 64 60.9
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-14 84.7 270 32.6
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.1e-14 84.7 270 32.6
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.2e-14 82.8 255 31.4
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 5.5e-14 82.4 80 56.2
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.2e-13 81.3 68 61.8
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.2e-13 81.3 68 61.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.1e-13 80.5 63 52.4
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.1e-13 79.0 369 23.6
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 7.9e-13 78.6 175 33.1
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.4e-12 77.8 62 64.5
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-12 77.0 92 43.5
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 5.1e-12 75.9 269 26.8
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-11 74.7 179 32.4
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.5e-11 74.3 78 48.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 9.7e-11 71.6 208 31.2
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-10 71.2 305 28.9
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-10 71.2 305 28.9
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-10 69.7 264 28.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 3.7e-10 69.7 264 28.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 3.7e-10 69.7 264 28.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 4.8e-10 69.3 299 29.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 8.2e-10 68.6 245 27.8
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.4e-09 67.0 248 27.8
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 4.1e-09 66.2 101 39.6
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.6e-08 63.5 83 45.8
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 7.7e-08 62.0 178 33.7
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 7.7e-08 62.0 260 25.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.0e-07 61.6 86 45.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.3e-07 61.2 83 48.2
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 5.0e-07 59.3 101 36.6
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 8.5e-07 58.5 101 35.6
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 4.2e-06 56.2 92 41.3
SalBow2G2594 Salvia bowleyana HOM05D033584 ORTHO05D030560 7.2e-06 55.5 102 42.2


User provided reference genes

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