Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 2.1e-219 765.4 377 100.0
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.1e-122 444.1 376 62.8
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.1e-122 444.1 376 62.8
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 3.4e-121 439.1 377 63.9
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 1.6e-115 420.2 376 60.9
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 9.3e-111 404.4 377 58.1
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 6.0e-110 401.7 377 58.1
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 1.0e-109 401.0 377 57.8
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 6.6e-109 398.3 387 58.4
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 4.3e-108 395.6 377 58.4
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 7.4e-108 394.8 377 56.8
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 6.9e-106 388.3 377 57.3
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 2.6e-105 386.3 376 56.6
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.7e-104 383.6 377 57.0
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.9e-103 380.2 352 59.7
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.1e-102 376.7 377 55.7
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.0e-101 374.4 377 54.1
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.3e-100 369.4 377 53.8
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 7.4e-100 368.2 381 52.8
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 1.1e-98 364.4 377 53.8
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 1.8e-98 363.6 378 55.0
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 2.4e-98 363.2 376 55.1
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.1e-98 362.8 377 54.4
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 1.2e-97 360.9 377 53.3
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 2.0e-97 360.1 377 54.1
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 3.8e-96 355.9 376 53.5
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 8.4e-96 354.8 377 51.7
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.4e-95 354.0 376 52.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 4.2e-95 352.4 377 53.3
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 5.5e-95 352.1 381 52.5
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 7.1e-95 351.7 376 52.9
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 2.7e-94 349.7 375 52.0
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 4.6e-94 349.0 380 53.2
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.3e-93 347.4 377 52.5
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 1.8e-93 347.1 375 54.4
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 3.0e-93 346.3 376 52.7
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 3.3e-92 342.8 377 52.5
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 3.3e-92 342.8 379 50.4
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 7.4e-92 341.7 377 52.0
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 2.1e-91 340.1 376 51.9
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 6.9e-90 335.1 376 52.1
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 3.4e-89 332.8 393 49.4
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 4.5e-89 332.4 378 50.8
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 4.5e-89 332.4 445 45.4
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 4.5e-89 332.4 377 50.1
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 9.3e-87 324.7 375 50.4
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.6e-86 322.8 375 50.1
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 4.6e-86 322.4 375 49.9
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 4.6e-86 322.4 376 50.8
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 7.9e-86 321.6 376 51.1
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 2.3e-85 320.1 381 48.8
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.3e-83 314.3 377 49.6
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.3e-83 314.3 375 48.8
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 3.7e-83 312.8 375 49.3
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 4.1e-82 309.3 363 48.8
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 6.9e-82 308.5 401 47.9
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 9.0e-82 308.1 375 48.3
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 9.0e-82 308.1 379 47.0
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.2e-81 307.8 377 48.3
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 1.2e-81 307.8 376 48.1
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 3.4e-81 306.2 375 48.0
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 5.9e-81 305.4 379 45.6
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 1.7e-80 303.9 377 47.7
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 2.2e-80 303.5 375 48.3
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 2.2e-80 303.5 379 45.1
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 2.9e-80 303.1 376 48.4
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 1.4e-77 294.3 375 46.4
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 2.3e-77 293.5 377 47.5
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 8.8e-77 291.6 391 46.5
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 8.8e-77 291.6 334 49.7
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 3.3e-76 289.7 375 45.9
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 4.8e-75 285.8 376 44.1
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 4.8e-75 285.8 396 44.9
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 6.3e-75 285.4 376 45.5
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 2.0e-73 280.4 377 44.0
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 3.4e-73 279.6 376 45.7
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 1.9e-71 273.9 376 45.2
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 2.5e-71 273.5 379 41.7
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 4.8e-67 259.2 376 41.8
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 4.1e-66 256.1 335 45.7
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 2.6e-65 253.4 376 41.5
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 1.9e-63 247.3 375 39.7
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 2.5e-63 246.9 235 56.6
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 7.2e-63 245.4 354 42.7
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 5.7e-60 235.7 315 43.2
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 3.1e-58 229.9 315 43.5
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.5e-57 226.5 314 42.4
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 5.0e-56 222.6 377 40.1
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 2.8e-51 206.8 195 58.5
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 1.6e-49 201.1 354 37.9
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 2.7e-49 200.3 210 50.5
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 1.8e-45 187.6 166 58.4
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 3.8e-40 169.9 122 67.2
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 2.5e-39 167.2 300 37.3
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 2.1e-38 164.1 378 29.9
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 6.1e-38 162.5 122 66.4
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.4e-37 161.4 165 51.5
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 2.0e-36 157.5 138 61.6
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.0e-36 157.5 132 61.4
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 3.4e-36 156.8 173 52.6
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 4.4e-36 156.4 125 63.2
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 4.4e-36 156.4 122 61.5
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 2.2e-35 154.1 379 32.2
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 9.2e-34 148.7 333 32.7
Sopen01g030190 Solanum pennellii HOM05D001245 ORTHO05D004475 3.5e-33 146.7 160 51.9
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.1e-31 141.7 374 28.6
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.4e-29 134.8 375 27.2
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 1.2e-28 131.7 85 68.2
ATR0561G228 Amborella trichopoda HOM05D001245 ORTHO05D004475 1.7e-27 127.9 166 44.6
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-26 125.2 90 63.3
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.0e-24 116.3 96 62.5
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 5.0e-24 116.3 91 62.6
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.6e-24 115.5 93 64.5
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.3e-23 112.5 95 61.1
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 2.1e-22 110.9 91 61.5
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 3.4e-20 103.6 84 58.3
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 3.4e-20 103.6 312 28.8
CsaV3_1G017340 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.4e-20 103.2 91 56.0
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 5.8e-20 102.8 94 53.2
CsaV3_UNG224680 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.2e-17 95.1 97 51.5
CsaV3_UNG224640 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.3e-16 90.9 97 50.5
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.1e-16 89.7 74 62.2
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 7.3e-15 85.9 123 35.0
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 7.1e-10 69.3 196 27.6
Eucgr.B02057 Eucalyptus grandis HOM05D001245 ORTHO05D004475 2.1e-09 67.8 84 44.0
Psat0s9845g0040 Pisum sativum HOM05D001245 ORTHO05D004475 7.8e-09 65.9 72 56.9
Psat3g039720 Pisum sativum HOM05D001235 ORTHO05D004475 7.8e-09 65.9 72 56.9
HPP92_002159 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.7e-08 64.7 43 69.8
PRCOL_00000968 Prasinoderma coloniale HOM05D001245 ORTHO05D004475 2.3e-08 64.3 86 37.2
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 1.1e-07 62.0 151 27.8
CsaV3_2G000050 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.3e-07 60.1 34 76.5
CsaV3_UNG169320 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.3e-07 60.1 34 76.5
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 9.6e-07 58.9 122 31.1
arahy.Tifrunner.gnm1.ann1.FDL07N Arachis hypogaea HOM05D001003 ORTHO05D003884 2.1e-06 57.8 32 75.0


User provided reference genes

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