Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 2.7e-132 475.3 234 100.0
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.1e-72 277.3 234 59.4
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 4.5e-71 271.9 199 69.8
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 7.4e-66 254.6 236 56.8
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 9.6e-66 254.2 236 56.8
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 9.6e-66 254.2 236 56.8
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 6.2e-65 251.5 206 60.2
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 8.1e-65 251.1 235 57.4
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 4.0e-64 248.8 235 56.2
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 5.8e-63 245.0 243 55.6
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 7.6e-63 244.6 206 58.3
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.3e-62 243.8 208 59.6
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.3e-62 243.8 208 59.6
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 2.9e-62 242.7 232 56.5
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.9e-62 242.7 224 54.0
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 4.9e-62 241.9 242 55.0
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 3.2e-61 239.2 231 53.2
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.2e-61 239.2 208 56.2
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 2.1e-60 236.5 219 57.1
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 7.9e-60 234.6 203 57.1
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.0e-59 234.2 206 56.8
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 2.3e-59 233.0 205 57.1
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 3.0e-59 232.6 206 57.3
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 3.0e-59 232.6 219 55.3
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 6.7e-59 231.5 208 53.8
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.1e-58 230.7 231 52.8
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 1.9e-58 229.9 231 54.1
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.9e-58 229.9 243 51.0
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 2.5e-58 229.6 333 41.7
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 4.3e-58 228.8 184 60.3
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.7e-58 228.4 214 55.1
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 3.7e-57 225.7 205 53.7
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 4.8e-57 225.3 205 54.6
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 4.8e-57 225.3 236 50.4
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 6.9e-56 221.5 206 51.9
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.2e-55 220.7 225 49.3
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.0e-55 219.9 225 50.2
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 2.6e-55 219.5 225 52.4
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.6e-55 219.5 234 53.8
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 4.5e-55 218.8 240 48.8
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 7.6e-55 218.0 232 49.6
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 7.6e-55 218.0 242 52.1
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.0e-54 217.6 250 47.6
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.0e-54 217.6 177 61.0
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 2.9e-54 216.1 212 53.3
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 2.9e-54 216.1 224 51.8
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 3.8e-54 215.7 139 72.7
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.2e-52 210.7 214 48.6
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.1e-52 209.9 238 46.6
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 6.1e-52 208.4 232 47.8
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.3e-51 207.2 138 68.8
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 1.8e-51 206.8 237 46.0
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 2.3e-51 206.5 220 51.4
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 5.1e-51 205.3 241 46.1
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 8.7e-51 204.5 147 68.7
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 1.5e-50 203.8 207 50.2
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 7.4e-50 201.4 228 48.2
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 7.4e-50 201.4 239 47.7
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 9.7e-50 201.1 212 51.9
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.6e-49 200.3 211 50.2
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 2.2e-49 199.9 228 47.8
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 2.2e-49 199.9 228 47.8
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 2.8e-49 199.5 261 41.8
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 3.7e-49 199.1 209 52.2
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 3.7e-49 199.1 256 42.2
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 3.7e-49 199.1 246 47.2
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 1.4e-48 197.2 209 51.7
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.8e-48 196.8 237 46.8
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 2.4e-48 196.4 204 51.0
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 3.1e-48 196.1 176 54.5
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 3.1e-48 196.1 176 54.5
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 5.3e-48 195.3 235 46.4
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 5.3e-48 195.3 235 46.4
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.3e-48 195.3 240 47.9
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.3e-48 195.3 240 47.9
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.3e-48 195.3 240 47.9
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 9.1e-48 194.5 207 49.3
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.2e-47 194.1 207 49.3
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 2.0e-47 193.4 216 51.4
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 2.6e-47 193.0 234 46.2
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 3.4e-47 192.6 234 46.2
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.3e-46 190.7 231 45.9
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.1e-45 187.6 151 60.9
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 3.2e-45 186.0 156 60.3
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 9.4e-45 184.5 247 46.2
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 2.7e-44 183.0 221 46.2
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 2.0e-42 176.8 261 40.2
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 8.2e-41 171.4 247 39.7
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 6.9e-40 168.3 136 58.8
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 3.2e-37 159.5 126 60.3
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 3.2e-37 159.5 127 63.0
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 9.4e-37 157.9 201 42.8
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.6e-36 157.1 212 41.5
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.6e-36 157.1 130 58.5
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 2.1e-36 156.8 127 61.4
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 2.7e-36 156.4 127 62.2
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 6.1e-36 155.2 144 53.5
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 6.1e-36 155.2 135 56.3
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 7.9e-36 154.8 130 57.7
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.4e-35 154.1 127 59.8
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 3.0e-35 152.9 130 63.8
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 3.9e-35 152.5 139 58.3
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 3.3e-34 149.4 232 40.5
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 1.3e-33 147.5 132 56.1
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.7e-33 147.1 130 56.9
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.7e-33 147.1 156 45.5
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 8.2e-33 144.8 150 50.7
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 7.0e-32 141.7 136 55.9
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 9.1e-32 141.4 129 58.9
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 3.2e-29 132.9 239 34.7
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 7.2e-29 131.7 160 46.2
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 4.0e-27 125.9 218 35.8
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.3e-25 120.9 95 62.1
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.8e-24 117.1 172 38.4
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.2e-23 114.4 96 49.0
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.2e-18 97.8 66 63.6
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 1.3e-17 94.4 133 39.8
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.5e-10 70.9 87 37.9
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 2.6e-10 70.1 69 49.3
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 2.2e-09 67.0 86 37.2


User provided reference genes

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