Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 4.2e-74 281.6 173 100.0
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.4e-37 160.2 175 64.0
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.2e-36 157.1 175 65.7
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.5e-36 156.8 176 56.2
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 6.5e-35 151.4 176 68.8
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 8.5e-35 151.0 176 64.2
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 1.1e-34 150.6 175 66.3
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.4e-34 150.2 183 62.8
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 2.5e-34 149.4 172 66.3
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.1e-33 146.4 173 60.7
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.0e-32 144.1 175 68.0
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 5.1e-32 141.7 182 63.7
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 6.7e-32 141.4 176 68.2
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.1e-31 140.6 176 56.2
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 2.0e-31 139.8 172 53.5
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 2.6e-31 139.4 170 62.4
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 4.4e-31 138.7 176 68.2
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 1.3e-30 137.1 175 68.6
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 2.2e-30 136.3 181 64.1
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.8e-30 136.0 180 58.3
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 2.8e-30 136.0 179 60.3
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 3.7e-30 135.6 182 63.7
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 4.8e-30 135.2 173 57.2
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 4.8e-30 135.2 118 71.2
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 6.3e-30 134.8 139 54.0
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.8e-29 133.3 176 63.6
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 5.3e-29 131.7 173 64.7
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 7.0e-29 131.3 178 60.7
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 7.0e-29 131.3 177 66.1
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 7.0e-29 131.3 179 62.6
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 9.1e-29 131.0 176 63.6
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 9.1e-29 131.0 181 49.7
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 1.2e-28 130.6 180 62.2
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.5e-28 130.2 179 60.3
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 2.6e-28 129.4 183 61.7
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 3.5e-28 129.0 181 64.1
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.5e-28 128.6 181 61.9
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 7.7e-28 127.9 172 62.8
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 7.7e-28 127.9 172 62.8
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 7.7e-28 127.9 170 63.5
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 7.7e-28 127.9 170 63.5
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 7.7e-28 127.9 177 61.0
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 1.0e-27 127.5 183 61.2
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.2e-27 126.3 176 50.0
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 3.8e-27 125.6 171 66.1
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.8e-27 125.6 175 45.1
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.0e-27 125.2 172 61.6
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.0e-27 125.2 176 55.1
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 5.0e-27 125.2 176 49.4
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 6.5e-27 124.8 185 49.2
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.5e-27 124.8 175 45.1
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 1.5e-26 123.6 176 61.4
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.5e-26 123.6 161 64.6
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.9e-26 123.2 181 60.2
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.9e-26 123.2 176 64.2
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.2e-26 122.1 176 61.4
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 5.5e-26 121.7 174 63.2
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 7.2e-26 121.3 176 47.7
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 7.2e-26 121.3 180 62.2
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 9.4e-26 120.9 173 57.2
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 1.6e-25 120.2 176 60.8
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 2.7e-25 119.4 181 60.8
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 3.6e-25 119.0 177 58.2
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 4.7e-25 118.6 172 59.9
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 4.7e-25 118.6 167 64.1
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 6.1e-25 118.2 172 60.5
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 8.0e-25 117.9 178 59.0
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.0e-24 117.5 180 47.2
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 4.0e-24 115.5 172 57.0
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 5.2e-24 115.2 157 62.4
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 6.7e-24 114.8 172 62.2
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 8.8e-24 114.4 130 54.6
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 1.5e-23 113.6 172 49.4
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 1.5e-23 113.6 190 51.6
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.5e-23 113.6 178 58.4
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 2.0e-23 113.2 154 66.2
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 3.3e-23 112.5 157 63.7
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 5.7e-23 111.7 174 60.3
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 7.5e-23 111.3 172 59.3
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.3e-22 110.5 172 52.3
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.3e-22 110.5 172 60.5
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 1.3e-22 110.5 173 60.7
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 1.3e-22 110.5 173 60.7
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 2.2e-22 109.8 174 56.3
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 2.8e-22 109.4 190 54.7
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 3.7e-22 109.0 172 44.2
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 3.7e-22 109.0 172 44.2
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 4.8e-22 108.6 119 61.3
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 6.3e-22 108.2 181 58.6
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.1e-21 107.5 167 53.9
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.1e-21 107.5 172 44.8
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 1.4e-21 107.1 172 59.9
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.8e-21 106.7 170 42.9
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 4.1e-21 105.5 172 43.6
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 7.0e-21 104.8 177 43.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 7.0e-21 104.8 181 54.7
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 7.0e-21 104.8 190 52.1
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 9.1e-21 104.4 169 45.6
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 9.1e-21 104.4 168 44.6
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 9.1e-21 104.4 168 44.6
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.2e-20 104.0 166 45.2
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 2.0e-20 103.2 190 52.1
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 2.6e-20 102.8 123 50.4
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 4.5e-20 102.1 123 51.2
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 7.7e-20 101.3 168 43.5
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 7.7e-20 101.3 168 43.5
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 7.7e-20 101.3 168 43.5
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 1.3e-19 100.5 176 43.8
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 1.7e-19 100.1 167 42.5
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 5.0e-19 98.6 171 43.9
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 6.5e-19 98.2 132 47.7
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.5e-18 97.1 173 59.0
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 2.5e-18 96.3 170 55.3
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 3.2e-18 95.9 170 58.8
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.5e-18 95.1 170 54.7
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 7.2e-18 94.7 87 57.5
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.7e-17 92.0 126 46.8
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 4.7e-17 92.0 173 53.8
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 6.1e-17 91.7 173 53.2
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 8.0e-17 91.3 187 52.9
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 1.0e-16 90.9 172 55.2
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 1.0e-16 90.9 168 53.0
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 2.3e-16 89.7 87 85.1
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.0e-15 86.7 125 47.2
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 3.4e-15 85.9 123 46.3
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 7.5e-15 84.7 124 45.2
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 1.3e-14 84.0 172 54.7
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 8.3e-14 81.3 129 59.7
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 4.1e-13 79.0 248 40.3
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 5.4e-13 78.6 125 44.8
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 4.5e-12 75.5 121 49.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.7e-11 73.6 173 35.3
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 1.9e-10 70.1 172 51.2
ECA246G0037 Erigeron canadensis HOM05D005335 ORTHO05D006472 2.5e-10 69.7 173 49.1
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 3.2e-10 69.3 174 49.4
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 1.4e-08 63.9 115 41.7
SEGI_18714 Sequoiadendron giganteum HOM05D005335 ORTHO05D006472 1.8e-08 63.5 95 64.2
CDE05G0391 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 3.0e-08 62.8 174 42.0
Lj9P479T20 Lonicera japonica HOM05D005335 ORTHO05D006472 1.5e-07 60.5 69 84.1
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 1.5e-07 60.5 126 54.8
Potri.010G101200 Populus trichocarpa HOM05D000179 ORTHO05D000107 3.4e-07 59.3 172 42.4
TWI53G1503 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.8e-06 56.2 85 62.4
arahy.Tifrunner.gnm1.ann1.MP8D0L Arachis hypogaea HOM05D000179 ORTHO05D000107 6.3e-06 55.1 78 67.9
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 6.3e-06 55.1 81 48.1
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 6.3e-06 55.1 157 38.9
CDE11G1049 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 8.3e-06 54.7 177 39.0
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 8.3e-06 54.7 171 27.5
TWI74G0208 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 8.3e-06 54.7 135 49.6


User provided reference genes

Program Settings