Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 8.8e-51 203.4 106 100.0
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 8.0e-44 180.3 106 85.8
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 8.0e-44 180.3 104 87.5
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 1.0e-43 179.9 106 86.8
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 2.3e-43 178.7 104 85.6
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 2.3e-43 178.7 104 85.6
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 4.0e-43 177.9 106 84.9
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 5.2e-43 177.6 106 86.8
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 6.8e-43 177.2 104 87.5
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 8.8e-43 176.8 104 82.7
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 8.8e-43 176.8 104 83.7
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 8.8e-43 176.8 104 83.7
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 1.2e-42 176.4 104 82.7
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.5e-42 176.0 106 83.0
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.6e-42 175.3 106 85.8
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 2.6e-42 175.3 104 86.5
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 3.4e-42 174.9 106 86.8
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 3.4e-42 174.9 104 82.7
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 5.7e-42 174.1 106 86.8
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 5.7e-42 174.1 104 85.6
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 2.8e-41 171.8 104 87.5
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 8.3e-41 170.2 106 81.1
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 4.1e-40 167.9 104 85.6
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 9.2e-40 166.8 98 85.7
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 1.6e-39 166.0 104 81.7
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 1.6e-39 166.0 99 90.9
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 3.5e-39 164.9 106 78.3
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 3.5e-39 164.9 98 82.7
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 4.5e-39 164.5 106 84.0
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 1.3e-38 162.9 112 76.8
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 1.3e-38 162.9 104 80.8
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 1.7e-38 162.5 104 83.7
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.3e-38 162.2 106 83.0
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 2.9e-38 161.8 104 79.8
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 2.9e-38 161.8 115 79.1
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 5.0e-38 161.0 100 80.0
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 5.0e-38 161.0 100 80.0
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 6.6e-38 160.6 112 80.4
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 6.6e-38 160.6 104 80.8
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.1e-37 159.8 104 79.8
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 1.5e-37 159.5 99 84.8
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 4.3e-37 157.9 110 76.4
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 5.6e-37 157.5 104 83.7
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 5.6e-37 157.5 99 78.8
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 5.6e-37 157.5 104 83.7
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 1.2e-36 156.4 106 77.4
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 1.6e-36 156.0 107 80.4
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 2.8e-36 155.2 104 82.7
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 3.6e-36 154.8 104 81.7
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 3.6e-36 154.8 105 78.1
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 6.1e-36 154.1 98 78.6
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 3.0e-35 151.8 106 78.3
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 5.2e-35 151.0 97 85.6
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 8.9e-35 150.2 104 80.8
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 2.0e-34 149.1 94 81.9
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 3.4e-34 148.3 104 73.1
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 4.4e-34 147.9 99 82.8
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 9.8e-34 146.7 106 76.4
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 1.7e-33 146.0 115 67.0
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 1.7e-33 146.0 115 67.0
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 2.2e-33 145.6 99 82.8
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 2.9e-33 145.2 105 68.6
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 3.7e-33 144.8 108 71.3
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 6.4e-33 144.1 110 71.8
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 3.2e-32 141.7 104 76.0
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 7.0e-32 140.6 103 74.8
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 1.2e-31 139.8 111 72.1
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 1.2e-31 139.8 88 81.8
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 5.9e-31 137.5 116 65.5
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 1.0e-30 136.7 87 81.6
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 1.0e-30 136.7 104 75.0
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 1.0e-30 136.7 104 75.0
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 1.3e-30 136.3 110 72.7
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 1.3e-30 136.3 110 70.9
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 3.0e-30 135.2 110 73.6
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 6.6e-30 134.0 117 64.1
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 1.1e-29 133.3 89 80.9
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 1.1e-29 133.3 114 67.5
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 1.5e-29 132.9 104 64.4
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 1.9e-29 132.5 106 65.1
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 5.6e-29 131.0 104 62.5
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 7.3e-29 130.6 110 68.2
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 7.3e-29 130.6 111 71.2
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 1.2e-28 129.8 112 64.3
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 1.6e-28 129.4 109 64.2
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 6.2e-28 127.5 118 59.3
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 8.0e-28 127.1 116 59.5
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 8.0e-28 127.1 116 59.5
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 1.0e-27 126.7 117 59.0
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 1.4e-27 126.3 92 76.1
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 5.2e-27 124.4 109 65.1
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 1.2e-26 123.2 119 61.3
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 2.0e-26 122.5 92 77.2
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 2.2e-25 119.0 106 57.5
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 2.2e-25 119.0 112 62.5
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 2.9e-25 118.6 106 66.0
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 4.9e-25 117.9 111 64.9
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 4.9e-25 117.9 110 58.2
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 4.9e-25 117.9 110 58.2
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 4.9e-25 117.9 88 76.1
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 6.4e-25 117.5 107 62.6
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 1.1e-24 116.7 106 61.3
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 5.4e-24 114.4 108 63.9
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 9.2e-24 113.6 108 63.9
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 1.2e-23 113.2 113 63.7
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 1.2e-23 113.2 111 62.2
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 1.6e-23 112.8 114 61.4
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 1.3e-22 109.8 66 86.4
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.1e-21 106.7 81 79.0
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 3.6e-20 101.7 105 54.3
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.9e-17 92.0 97 54.6
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 1.6e-15 86.3 72 72.2
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 2.1e-15 85.9 60 80.0
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 3.5e-15 85.1 86 61.6
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 1.1e-13 80.1 85 56.5
Nn1g08704 Nelumbo nucifera HOM05D006768 ORTHO05D008436 4.3e-13 78.2 53 86.8
Mapoly0043s0020 Marchantia polymorpha HOM05D006768 ORTHO05D008436 4.7e-12 74.7 117 46.2
Pp3c13_12030 Physcomitrium patens HOM05D006768 ORTHO05D008436 1.1e-11 73.6 104 45.2
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 4.4e-10 68.2 104 47.1
DCAR_014111 Daucus carota HOM05D006768 ORTHO05D008436 6.4e-09 64.3 57 71.9
SMO308G0024 Selaginella moellendorffii HOM05D006768 ORTHO05D008436 7.8e-07 57.4 105 43.8


User provided reference genes

Program Settings