Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 6.1e-166 587.4 298 100.0
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.0e-144 516.9 303 87.8
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 3.1e-141 505.4 298 85.9
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.2e-140 503.4 298 85.9
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 4.9e-139 498.0 298 85.6
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 4.1e-138 495.0 296 85.1
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.6e-137 493.0 298 84.2
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.6e-137 493.0 298 84.9
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 7.8e-137 490.7 298 83.6
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 7.8e-137 490.7 298 83.2
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.3e-136 490.0 298 82.2
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.3e-136 490.0 298 82.2
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 8.6e-136 487.3 298 80.9
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 1.5e-135 486.5 298 83.2
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.9e-135 486.1 298 83.6
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 6.8e-133 477.6 298 78.9
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 8.9e-133 477.2 298 81.5
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 8.9e-133 477.2 298 80.2
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.2e-132 476.9 298 80.9
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.6e-132 475.7 283 84.8
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 3.4e-132 475.3 298 81.9
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.4e-132 474.9 298 81.2
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 4.4e-132 474.9 298 81.5
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 5.8e-132 474.6 298 79.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 7.5e-132 474.2 298 80.2
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 7.5e-132 474.2 296 80.4
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.3e-131 473.4 298 78.9
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.7e-131 473.0 299 80.3
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.7e-131 473.0 298 78.5
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.7e-131 473.0 298 80.9
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.7e-131 473.0 298 80.9
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.7e-131 473.0 298 79.5
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 2.9e-131 472.2 298 81.5
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 2.9e-131 472.2 298 81.9
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.9e-131 472.2 298 80.5
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.9e-131 472.2 298 78.5
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.9e-131 472.2 295 80.0
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.9e-131 472.2 295 80.0
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 2.9e-131 472.2 296 80.1
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 3.7e-131 471.9 296 79.7
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 3.7e-131 471.9 296 79.7
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 3.2e-130 468.8 298 80.5
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 4.1e-130 468.4 298 80.9
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 5.4e-130 468.0 298 80.2
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.7e-129 465.7 298 80.2
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.5e-129 465.3 298 79.2
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 3.5e-129 465.3 303 79.2
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 4.6e-129 464.9 295 81.0
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 6.0e-129 464.5 296 77.7
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.3e-128 463.4 303 78.9
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 5.1e-128 461.5 298 79.2
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 5.1e-128 461.5 298 78.9
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.1e-128 461.5 298 77.9
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 5.1e-128 461.5 298 77.9
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 8.6e-128 460.7 316 74.4
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.1e-127 460.3 300 79.3
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.1e-127 460.3 316 74.1
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.1e-127 460.3 298 78.5
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.5e-127 459.9 298 78.9
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 2.5e-127 459.1 342 71.1
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.3e-127 458.8 296 78.4
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 3.3e-127 458.8 298 79.2
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.3e-127 458.4 296 78.0
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 9.5e-127 457.2 299 78.6
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.1e-126 456.1 298 77.2
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 6.2e-126 454.5 294 76.9
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.1e-125 453.8 298 76.2
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.8e-125 453.0 296 77.4
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.8e-125 451.1 294 76.2
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.8e-125 451.1 316 72.2
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 4.4e-124 448.4 298 77.2
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 7.6e-124 447.6 298 75.2
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.7e-123 446.4 298 75.5
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.9e-123 445.7 299 75.3
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 2.9e-123 445.7 298 75.5
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 4.9e-123 444.9 298 75.2
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.9e-122 443.0 293 76.5
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 7.1e-122 441.0 296 76.7
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 9.2e-122 440.7 298 75.2
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 1.2e-121 440.3 282 78.4
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 6.0e-121 438.0 219 100.0
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.0e-120 437.2 298 73.8
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 3.9e-120 435.3 262 83.6
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 6.6e-120 434.5 283 77.7
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.1e-119 433.7 284 76.8
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.9e-119 433.0 298 75.5
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 3.3e-119 432.2 298 73.8
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.6e-119 431.4 299 75.3
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 7.3e-119 431.0 298 73.2
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 9.6e-119 430.6 295 74.2
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 9.6e-119 430.6 298 73.5
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 3.6e-118 428.7 286 75.2
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 8.1e-118 427.6 295 72.5
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.1e-117 427.2 297 73.1
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.4e-117 426.8 295 72.2
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.4e-117 426.8 295 72.9
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 1.4e-117 426.8 278 78.8
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.4e-117 426.8 295 72.2
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.8e-117 426.4 295 72.5
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 2.4e-117 426.0 295 73.6
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 4.0e-117 425.2 295 72.9
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 4.0e-117 425.2 295 72.9
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 6.8e-117 424.5 298 71.8
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-116 422.9 298 71.8
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 4.4e-116 421.8 295 72.2
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 6.4e-115 417.9 295 71.9
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.4e-114 416.8 250 83.6
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 2.3e-112 409.5 298 70.8
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 9.6e-111 404.1 295 70.2
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 2.0e-108 396.4 298 72.1
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.6e-108 396.0 321 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.2e-99 366.3 292 60.6
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 9.3e-98 360.9 224 80.8
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.3e-94 350.5 298 62.1
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 4.8e-94 348.6 224 78.6
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.5e-91 338.2 295 58.0
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 6.5e-91 338.2 224 77.7
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 8.4e-91 337.8 295 58.0
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.2e-90 335.9 295 58.0
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 5.5e-90 335.1 291 60.1
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 9.3e-90 334.3 218 76.1
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 2.7e-89 332.8 262 62.6
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 9.6e-87 324.3 280 61.4
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.0e-83 314.3 275 62.5
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 2.9e-83 312.8 296 56.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 5.5e-82 308.5 220 70.0
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 2.2e-70 270.0 257 54.5
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 6.3e-70 268.5 177 78.5
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 8.2e-70 268.1 252 57.5
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 4.2e-66 255.8 150 85.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 9.7e-63 244.6 224 58.0
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.0e-59 234.6 204 63.7
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 8.5e-59 231.5 162 69.8
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 5.7e-55 218.8 150 72.0
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 2.4e-53 213.4 143 69.2
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.5e-52 209.5 135 74.1
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.1e-45 188.0 266 38.7
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 2.0e-44 183.7 183 56.3
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-39 167.2 138 62.3
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.0e-39 167.2 107 79.4
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.6e-36 157.5 302 35.1
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 8.0e-33 145.2 108 72.2
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 9.8e-31 138.3 99 64.6
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 7.0e-29 132.1 132 56.1
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 1.8e-24 117.5 270 28.9
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 3.7e-22 109.8 64 87.5
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 4.9e-22 109.4 82 69.5
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.9e-21 107.5 128 51.6
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-19 100.9 116 50.9
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-16 89.4 106 49.1
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-14 84.7 106 47.2
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 4.1e-13 79.7 106 46.2
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 9.5e-10 68.6 39 82.1
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 2.3e-08 63.9 69 52.2
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.3e-08 63.9 52 61.5
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 8.9e-08 62.0 45 62.2
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.6e-07 60.5 52 57.7
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.6e-07 60.5 52 57.7
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 1.3e-06 58.2 55 54.5


User provided reference genes

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