Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.5e-130 468.8 235 100.0
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.6e-121 438.3 219 100.0
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 3.7e-110 401.7 219 91.3
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.6e-108 396.4 219 89.0
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.7e-107 392.9 219 89.5
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 8.6e-107 390.6 219 89.5
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 8.1e-105 384.0 226 86.3
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.5e-103 379.8 219 85.4
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.6e-103 379.0 229 83.8
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 9.9e-103 377.1 219 84.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 9.9e-103 377.1 219 84.9
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.7e-102 376.3 226 81.9
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 2.2e-102 375.9 224 83.0
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.2e-102 375.9 226 83.6
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 3.8e-102 375.2 219 84.0
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.4e-102 374.4 219 84.0
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 8.4e-102 374.0 219 84.0
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 8.4e-102 374.0 228 82.0
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.4e-101 373.2 219 81.7
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 3.2e-101 372.1 226 82.3
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 2.1e-100 369.4 219 82.2
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 4.6e-100 368.2 219 84.5
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 7.8e-100 367.5 226 79.2
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 7.8e-100 367.5 219 83.1
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.0e-99 367.1 219 83.6
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.0e-99 367.1 226 78.8
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.3e-99 366.7 226 78.8
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.3e-99 366.7 226 80.1
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.3e-99 365.9 219 80.8
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 5.1e-99 364.8 226 78.8
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.1e-99 364.8 223 79.8
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.1e-99 364.8 223 79.8
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 5.1e-99 364.8 217 82.9
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 5.1e-99 364.8 217 82.9
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 6.6e-99 364.4 219 82.2
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 6.6e-99 364.4 219 83.6
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 6.6e-99 364.4 217 82.5
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 1.1e-98 363.6 223 81.6
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.1e-98 363.6 219 80.4
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 1.1e-98 363.6 219 84.0
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.9e-98 362.8 219 81.3
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.5e-98 362.5 219 82.2
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 2.5e-98 362.5 219 79.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 3.3e-98 362.1 219 80.4
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.3e-98 362.1 204 86.3
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 3.3e-98 362.1 219 82.2
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 3.3e-98 362.1 229 78.2
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 5.6e-98 361.3 219 82.6
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 7.3e-98 360.9 219 81.3
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 7.3e-98 360.9 219 81.7
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.1e-97 359.4 226 78.3
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 6.2e-97 357.8 219 80.8
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 8.1e-97 357.5 231 76.6
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 8.1e-97 357.5 219 80.8
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.1e-96 357.1 219 81.7
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.8e-96 356.3 219 78.5
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.4e-96 355.9 219 81.7
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.1e-96 355.5 222 77.9
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 3.1e-96 355.5 219 79.9
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 3.1e-96 355.5 219 81.7
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 4.0e-96 355.1 244 72.5
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 5.3e-96 354.8 219 80.4
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 6.9e-96 354.4 217 81.1
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 6.9e-96 354.4 219 81.7
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 9.0e-96 354.0 244 72.5
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.5e-95 353.2 217 81.1
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-95 352.4 219 79.5
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.4e-95 352.1 244 71.7
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 4.4e-95 351.7 219 78.5
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 3.8e-94 348.6 222 77.9
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 3.8e-94 348.6 219 78.5
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 3.8e-94 348.6 219 79.5
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 6.4e-94 347.8 219 79.5
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 6.4e-94 347.8 226 75.7
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 8.4e-94 347.4 224 79.5
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 8.4e-94 347.4 224 79.5
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.5e-92 342.0 226 76.5
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.0e-92 341.3 215 75.8
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.0e-91 340.5 226 76.5
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.0e-91 340.5 219 75.8
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.0e-91 340.5 219 77.6
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 2.3e-91 339.3 219 78.5
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 2.3e-91 339.3 219 77.2
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 3.9e-91 338.6 221 76.0
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 6.6e-91 337.8 222 74.8
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 6.6e-91 337.8 219 75.8
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 8.7e-91 337.4 219 76.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 3.3e-90 335.5 218 75.7
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 4.3e-90 335.1 216 75.9
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 5.6e-90 334.7 219 75.3
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 5.6e-90 334.7 219 75.3
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 5.6e-90 334.7 218 76.1
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.6e-89 333.2 216 75.0
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 4.8e-89 331.6 219 75.8
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 6.2e-89 331.3 216 75.0
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 8.1e-89 330.9 203 79.8
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.1e-88 330.5 216 74.1
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.1e-88 330.5 216 74.1
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.1e-88 330.5 216 75.0
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 2.4e-88 329.3 216 74.1
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 5.3e-88 328.2 216 74.1
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 5.3e-88 328.2 216 74.1
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 9.0e-88 327.4 204 79.4
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 5.8e-87 324.7 216 73.1
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.9e-86 321.6 219 72.1
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 8.4e-86 320.9 216 72.7
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 2.4e-85 319.3 219 72.1
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 2.7e-84 315.8 199 78.9
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 1.8e-83 313.2 216 71.8
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 3.0e-83 312.4 219 72.1
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.9e-83 312.0 219 72.1
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 2.1e-76 289.7 226 69.9
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 3.0e-75 285.8 213 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 5.1e-75 285.0 216 63.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 6.3e-73 278.1 215 62.3
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.7e-70 270.0 218 61.9
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.9e-70 269.2 213 61.5
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 8.4e-70 267.7 213 60.1
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 3.3e-66 255.8 150 85.3
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 2.2e-65 253.1 145 83.4
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 8.2e-65 251.1 215 59.1
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.4e-64 250.4 229 59.8
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 5.3e-64 248.4 145 83.4
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 5.3e-64 248.4 219 59.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 1.2e-63 247.3 177 70.1
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.3e-59 233.0 145 79.3
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 6.7e-59 231.5 162 69.8
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-56 223.8 201 58.7
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 8.8e-51 204.5 183 55.7
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 3.3e-50 202.6 208 54.3
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-39 167.2 138 62.3
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.1e-37 161.0 98 78.6
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.5e-37 159.8 125 65.6
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 2.0e-34 150.2 220 37.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-31 141.0 145 51.0
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 2.9e-30 136.3 87 70.1
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 5.5e-29 132.1 132 56.1
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 6.1e-28 128.6 216 36.1
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 9.2e-24 114.8 69 75.4
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 2.9e-22 109.8 64 87.5
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.5e-21 107.5 128 51.6
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-19 100.9 116 50.9
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 6.8e-19 98.6 60 78.3
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.4e-18 96.3 56 73.2
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 3.7e-17 92.8 214 29.9
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 4.1e-16 89.4 106 49.1
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-14 84.7 106 47.2
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 3.3e-13 79.7 106 46.2
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 3.3e-13 79.7 56 62.5
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 7.5e-10 68.6 39 82.1
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 1.9e-08 63.9 69 52.2
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.9e-08 63.9 52 61.5
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 7.0e-08 62.0 45 62.2
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-07 60.5 52 57.7
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-07 60.5 52 57.7
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 1.0e-06 58.2 55 54.5
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 3.0e-06 56.6 28 82.1


User provided reference genes

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