Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 9.6e-222 773.1 365 100.0
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.6e-182 642.1 361 83.4
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.1e-180 636.7 362 81.8
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.7e-176 621.3 358 79.6
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 3.0e-175 618.6 346 82.1
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 4.1e-172 608.2 361 77.6
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 5.5e-169 597.8 366 77.9
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.1e-168 595.9 359 77.4
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.7e-168 594.7 361 74.8
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 6.1e-168 594.3 360 75.3
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.0e-167 593.6 364 75.5
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 6.8e-167 590.9 360 73.1
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.8e-167 590.5 340 77.4
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.2e-166 590.1 356 75.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.7e-165 586.3 359 73.8
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.2e-165 585.9 356 74.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 4.8e-165 584.7 359 74.9
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.4e-164 583.2 342 76.3
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.1e-164 582.0 360 72.5
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.1e-164 582.0 360 73.1
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.1e-164 582.0 362 75.1
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.2e-163 580.1 359 73.5
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.2e-163 580.1 342 75.7
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.7e-163 577.4 342 75.4
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.0e-162 577.0 341 76.8
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.0e-162 574.7 360 73.3
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.5e-161 573.2 349 73.4
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 4.2e-161 571.6 360 72.2
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.2e-160 570.1 362 72.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.2e-160 570.1 344 75.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.6e-160 569.7 345 75.9
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 4.7e-160 568.2 341 75.4
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.1e-160 567.8 360 72.2
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.1e-160 567.8 360 72.2
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 6.1e-160 567.8 362 71.8
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.8e-159 566.2 357 72.8
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.3e-159 565.8 362 70.7
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.5e-158 563.1 360 71.1
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 2.0e-158 562.8 363 72.2
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.0e-158 562.8 360 71.9
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 9.8e-158 560.5 347 73.8
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 4.9e-157 558.1 359 70.8
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 8.3e-157 557.4 360 71.1
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 3.2e-156 555.4 348 72.7
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.2e-155 553.5 345 70.7
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.0e-155 552.7 344 73.0
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 3.5e-155 552.0 367 69.5
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 5.9e-155 551.2 368 69.3
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.0e-154 550.4 361 72.9
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 3.9e-154 548.5 345 71.6
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 3.9e-154 548.5 342 71.6
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 3.9e-154 548.5 366 69.1
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 6.6e-154 547.7 366 68.9
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.3e-153 545.4 361 70.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 9.5e-153 543.9 362 67.7
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.2e-152 543.5 308 78.6
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.1e-152 542.7 346 71.1
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.1e-152 542.7 364 68.1
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 2.8e-152 542.3 364 67.6
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 2.8e-152 542.3 346 70.8
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 4.7e-152 541.6 433 60.7
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 6.1e-152 541.2 345 69.9
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 6.1e-152 541.2 364 67.6
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 6.1e-152 541.2 347 69.7
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 8.0e-152 540.8 364 66.8
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.4e-151 540.0 364 67.3
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.4e-151 540.0 364 67.3
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-151 540.0 345 71.0
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.8e-151 539.7 364 68.1
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 2.3e-151 539.3 346 71.1
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 8.9e-151 537.3 359 67.7
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 4.4e-150 535.0 364 67.0
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.9e-149 532.3 345 71.3
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 8.3e-149 530.8 339 73.7
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.1e-148 530.4 342 68.7
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.4e-148 530.0 350 69.4
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 2.4e-148 529.3 455 58.0
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 3.2e-148 528.9 345 69.6
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.2e-148 528.9 350 69.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 4.1e-148 528.5 322 73.6
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 7.0e-148 527.7 322 73.6
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 7.0e-148 527.7 350 68.9
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-147 526.9 322 73.3
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 1.6e-147 526.6 347 68.3
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.7e-147 525.8 340 72.1
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 4.6e-147 525.0 322 73.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 6.0e-147 524.6 340 71.8
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 6.6e-146 521.2 373 66.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.5e-145 519.2 316 75.3
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.3e-145 518.5 344 70.3
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 7.3e-145 517.7 361 65.7
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 9.5e-145 517.3 340 71.8
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.2e-144 516.9 340 69.7
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 8.0e-144 514.2 338 69.5
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.1e-143 513.8 397 63.2
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.3e-143 512.7 358 65.4
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.0e-143 511.9 340 69.1
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 5.2e-143 511.5 341 67.7
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.4e-142 508.4 320 80.6
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 3.0e-138 495.7 361 63.7
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.6e-138 494.6 363 65.6
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 6.6e-138 494.6 363 65.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 3.3e-137 492.3 312 75.3
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.2e-136 490.3 359 63.8
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 4.9e-133 478.4 360 65.6
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.4e-132 476.9 339 67.0
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.1e-131 473.0 353 65.4
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 2.3e-130 469.5 344 63.4
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.2e-128 463.8 332 64.8
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.3e-125 453.8 348 60.3
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-125 453.4 279 72.4
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 3.8e-125 452.2 279 72.0
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 3.2e-124 449.1 279 71.7
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.8e-120 436.0 269 71.4
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 7.3e-113 411.4 264 70.5
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 7.3e-113 411.4 337 59.1
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.2e-108 395.6 287 63.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 3.7e-104 382.5 316 57.0
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.9e-103 378.3 230 73.5
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.9e-100 370.2 252 67.9
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.8e-98 363.6 228 71.1
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 6.9e-95 351.7 333 49.5
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.6e-94 349.7 208 74.5
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.4e-92 344.0 230 69.6
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.7e-91 339.7 323 53.3
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.0e-90 336.3 363 46.6
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.4e-87 327.4 327 49.5
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 4.1e-87 325.9 343 46.4
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 3.4e-86 322.8 219 64.4
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.9e-85 319.7 267 57.3
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.7e-80 302.8 179 76.0
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.2e-78 297.7 192 73.4
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-77 294.3 207 65.2
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 6.5e-77 292.0 346 45.1
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.1e-75 285.4 211 64.5
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.5e-61 238.8 153 73.9
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.6e-59 234.2 225 51.1
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 3.4e-57 226.5 158 66.5
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 7.5e-49 198.7 142 66.2
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 8.0e-43 178.7 228 44.3
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.7e-32 144.4 110 64.5
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.2e-32 144.1 97 69.1
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 2.9e-32 143.7 98 67.3
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.9e-31 141.0 91 67.0
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 7.1e-23 112.5 94 51.1
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 2.3e-13 80.9 106 35.8
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 1.9e-07 61.2 102 36.3


User provided reference genes

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