Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0008F-1.1_g005430 Hydrangea macrophylla HOM05D002683 ORTHO05D007757 3.2e-181 638.3 313 100.0
Dinv30908 Davidia involucrata HOM05D002683 ORTHO05D007757 1.5e-162 576.2 311 88.4
TAR633G1207 Trochodendron aralioides HOM05D002683 ORTHO05D007757 6.2e-145 517.7 331 76.1
GSVIVG01031262001 Vitis vinifera HOM05D002683 ORTHO05D007757 4.5e-143 511.5 329 74.8
Rhsim11G0097700 Rhododendron simsii HOM05D002683 ORTHO05D007757 7.1e-141 504.2 327 77.1
Oeu053732.1 Olea europaea HOM05D002683 ORTHO05D007757 1.3e-139 500.0 326 74.5
Duzib128G0271 Durio zibethinus HOM05D002683 ORTHO05D007757 4.3e-138 495.0 329 74.2
Medtr1g084190 Medicago truncatula HOM05D002683 ORTHO05D007757 7.4e-138 494.2 329 72.0
HanXRQChr04g0110421 Helianthus annuus HOM05D002683 ORTHO05D007757 3.7e-137 491.9 319 73.4
Manes.09G178200 Manihot esculenta HOM05D002683 ORTHO05D007757 1.1e-136 490.3 329 72.9
arahy.Tifrunner.gnm1.ann1.K5JNPB Arachis hypogaea HOM05D002683 ORTHO05D007757 1.8e-136 489.6 329 71.4
CiPaw.07G031200 Carya illinoinensis HOM05D002683 ORTHO05D007757 1.8e-136 489.6 329 72.0
TPR.G2640 Trifolium pratense HOM05D002683 ORTHO05D007757 2.4e-136 489.2 326 71.5
Ca_10183_v3 Cicer arietinum L. HOM05D002683 ORTHO05D007757 3.1e-136 488.8 329 70.8
Gorai.013G130400 Gossypium raimondii HOM05D002683 ORTHO05D007757 3.1e-136 488.8 319 74.3
Phvul.007G202700 Phaseolus vulgaris HOM05D002683 ORTHO05D007757 4.1e-136 488.4 318 72.6
Gohir.D13G115900 Gossypium hirsutum HOM05D002683 ORTHO05D007757 5.3e-136 488.0 319 74.0
Cfa006719 Carpinus fangiana HOM05D002683 ORTHO05D007541 6.9e-136 487.6 329 72.6
arahy.Tifrunner.gnm1.ann1.941PVT Arachis hypogaea HOM05D002683 ORTHO05D007757 9.0e-136 487.3 329 71.1
MSTRG.20371 Avicennia marina HOM05D002683 ORTHO05D007757 9.0e-136 487.3 329 72.6
Psat6g153200 Pisum sativum HOM05D002683 ORTHO05D007757 3.4e-135 485.3 329 71.7
VMungo0720G2268 Vigna mungo HOM05D002683 ORTHO05D007757 1.0e-134 483.8 318 72.0
Lj5g0023373 Lotus japonicus HOM05D002683 ORTHO05D007757 1.3e-134 483.4 329 70.8
Cpa.g.sc48.179 Carica papaya HOM05D002683 ORTHO05D007757 2.2e-134 482.6 340 71.2
Sabra13G0006000 Salix brachista HOM05D002683 ORTHO05D007757 2.9e-134 482.3 329 71.4
Actinidia16874 Actinidia chinensis HOM05D002683 ORTHO05D007757 5.0e-134 481.5 327 74.6
Potri.013G007100 Populus trichocarpa HOM05D002683 ORTHO05D007757 5.0e-134 481.5 329 71.7
Glyma.10G146000 Glycine max HOM05D002683 ORTHO05D007757 6.5e-134 481.1 312 74.0
CAN.G1076.36 Capsicum annuum HOM05D002683 ORTHO05D007757 9.4e-133 477.2 329 70.8
Cc02_g35260 Coffea canephora HOM05D002683 ORTHO05D007757 1.2e-132 476.9 321 72.3
Glyma.20G095700 Glycine max HOM05D002683 ORTHO05D007757 1.2e-132 476.9 317 71.9
Gohir.A13G112900 Gossypium hirsutum HOM05D002683 ORTHO05D007757 1.2e-132 476.9 319 72.7
DCAR_005279 Daucus carota HOM05D002683 ORTHO05D007757 1.6e-132 476.5 329 70.5
Migut.B00939 Erythranthe guttata HOM05D002683 ORTHO05D007757 1.6e-132 476.5 329 69.3
ECA234G3328 Erigeron canadensis HOM05D002683 ORTHO05D007757 1.0e-131 473.8 318 70.1
Peaxi162Scf00357g00733 Petunia axillaris HOM05D002683 ORTHO05D007757 2.3e-131 472.6 319 72.1
Lalb_Chr06g0167431 Lupinus albus HOM05D002683 ORTHO05D007757 5.1e-131 471.5 326 70.9
Solyc01g100740.4 Solanum lycopersicum HOM05D002683 ORTHO05D007757 1.1e-130 470.3 319 72.4
Aqoxy2G02654 Aquilegia oxysepala HOM05D002683 ORTHO05D007757 4.3e-130 468.4 329 69.9
Sc16g0009160 Simmondsia chinensis HOM05D002683 ORTHO05D007757 4.3e-130 468.4 316 72.2
Ciclev10000978m.g Citrus clementina HOM05D002683 ORTHO05D007757 5.7e-130 468.0 329 70.2
RcHm_v2.0_Chr3g0457511 Rosa chinensis HOM05D002683 ORTHO05D007757 9.7e-130 467.2 337 69.4
SalBow7G3902 Salvia bowleyana HOM05D002683 ORTHO05D007757 1.3e-129 466.8 324 68.8
Sopen01g044240 Solanum pennellii HOM05D002683 ORTHO05D007757 2.2e-129 466.1 313 72.8
PGR083G0299 Punica granatum HOM05D002683 ORTHO05D007757 3.7e-129 465.3 315 72.1
MBI19_g03278_MAGBIO Magnolia biondii HOM05D002683 ORTHO05D007757 1.1e-128 463.8 329 71.1
QL03p016490 Quercus lobata HOM05D002683 ORTHO05D007757 4.1e-128 461.8 327 69.4
FAN05G3891 Fragaria x ananassa HOM05D002683 ORTHO05D007757 5.3e-128 461.5 322 71.1
FAN09G2929 Fragaria x ananassa HOM05D002683 ORTHO05D007757 5.3e-128 461.5 320 71.6
MELO3C004172.2 Cucumis melo HOM05D002683 ORTHO05D007757 2.0e-127 459.5 327 67.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.5e-127 458.4 344 68.0
Sed0019928 Sechium edule HOM05D002683 ORTHO05D007757 4.5e-127 458.4 312 69.9
FvH4_6g07800 Fragaria vesca HOM05D002683 ORTHO05D007757 1.3e-126 456.8 322 70.8
Eucgr.B01688 Eucalyptus grandis HOM05D002683 ORTHO05D007757 3.8e-126 455.3 327 68.5
vmacro01580 Vaccinium macrocarpon HOM05D002683 ORTHO05D007757 6.5e-126 454.5 302 74.2
Eucgr.L00254 Eucalyptus grandis HOM05D002683 ORTHO05D007757 8.5e-126 454.1 327 68.2
CsaV3_2G007210 Cucumis sativus L. HOM05D002683 ORTHO05D007757 1.9e-125 453.0 312 69.9
Thecc.05G325200 Theobroma cacao HOM05D002683 ORTHO05D007757 1.9e-125 453.0 309 71.8
unitig_42.g32306 Utricularia gibba HOM05D002683 ORTHO05D007757 5.5e-125 451.4 310 70.6
Hund07304 Selenicereus undatus HOM05D002683 ORTHO05D007757 2.7e-124 449.1 314 70.4
Haze_04041 Corylus avellana HOM05D002683 ORTHO05D007541 7.9e-124 447.6 346 65.6
AUR62000422 Chenopodium quinoa HOM05D002683 ORTHO05D007757 1.0e-123 447.2 315 67.9
CDE02G4054 Ceratophyllum demersum HOM05D002683 ORTHO05D007757 3.9e-123 445.3 332 66.0
QL03p016219 Quercus lobata HOM05D002683 ORTHO05D007757 3.9e-123 445.3 348 64.7
THA.LOC104820580 Tarenaya hassleriana HOM05D002683 ORTHO05D007757 1.1e-122 443.7 312 69.9
BcaB03g13283 Brassica carinata HOM05D002683 ORTHO05D007757 1.5e-122 443.4 314 69.1
Thhalv10007508m.g Eutrema salsugineum HOM05D002683 ORTHO05D007757 2.0e-122 443.0 314 69.7
PSO210G3019 Papaver somniferum HOM05D002683 ORTHO05D007757 2.6e-122 442.6 315 71.7
BraA08t35381Z Brassica rapa HOM05D002683 ORTHO05D007757 3.3e-122 442.2 314 70.1
COL.COLO4_05532 Corchorus olitorius HOM05D002683 ORTHO05D007541 3.3e-122 442.2 311 70.4
Sp1g07910 Schrenkiella parvula HOM05D002683 ORTHO05D007757 3.3e-122 442.2 314 69.1
BcaC07g38490 Brassica carinata HOM05D002683 ORTHO05D007757 7.4e-122 441.0 314 69.7
C08p12600 Brassica napus HOM05D002683 ORTHO05D007757 7.4e-122 441.0 314 69.7
BolC8t48898H Brassica oleracea HOM05D002683 ORTHO05D007757 7.4e-122 441.0 314 69.7
A08p34690 Brassica napus HOM05D002683 ORTHO05D007757 9.7e-122 440.7 314 69.4
HPP92_010879 Vanilla planifolia HOM05D002683 ORTHO05D007757 9.7e-122 440.7 310 68.1
HPP92_010926 Vanilla planifolia HOM05D002683 ORTHO05D007757 2.8e-121 439.1 310 67.7
PSO761G0375 Papaver somniferum HOM05D002683 ORTHO05D007757 3.7e-121 438.7 315 71.4
Nn3g21801 Nelumbo nucifera HOM05D002683 ORTHO05D007757 2.4e-120 436.0 311 71.4
AL1G19790 Arabidopsis lyrata HOM05D002683 ORTHO05D007757 4.1e-120 435.3 314 68.5
AT1G09300 Arabidopsis thaliana HOM05D002683 ORTHO05D007757 5.3e-120 434.9 314 68.2
Carub.0001s0864 Capsella rubella HOM05D002683 ORTHO05D007757 5.3e-120 434.9 314 67.8
CSS0049007 Camellia sinensis var. sinensis HOM05D002683 ORTHO05D007757 2.6e-119 432.6 267 79.8
Nitab4.5_0003838g0050 Nicotiana tabacum HOM05D002683 ORTHO05D007757 3.4e-119 432.2 311 68.8
CARHR009270 Cardamine hirsuta HOM05D002683 ORTHO05D007757 2.9e-118 429.1 314 66.9
ATR0693G361 Amborella trichopoda HOM05D002683 ORTHO05D007757 3.2e-117 425.6 312 68.3
ClCG02G014790 Citrullus lanatus HOM05D002683 ORTHO05D007757 6.7e-115 417.9 293 69.3
Lsat_1_v5_gn_5_148721 Lactuca sativa HOM05D002683 ORTHO05D007757 8.2e-113 411.0 270 73.3
TWI56G0626 Tripterygium wilfordii HOM05D002683 ORTHO05D007757 9.1e-112 407.5 273 73.3
Os12g0563500 Oryza sativa ssp. japonica HOM05D002683 ORTHO05D007757 1.3e-105 387.1 320 59.1
AUR62006768 Chenopodium quinoa HOM05D002683 ORTHO05D007757 7.0e-104 381.3 315 60.0
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 2.0e-103 379.8 322 60.9
Prupe.6G310400 Prunus persica HOM05D002683 ORTHO05D007757 4.5e-103 378.6 254 71.7
Ah.06g196180 Amaranthus hybridus HOM05D002683 ORTHO05D007757 1.4e-99 367.1 296 61.5
Nitab4.5_0003044g0120 Nicotiana tabacum HOM05D002683 ORTHO05D007757 6.3e-97 358.2 311 59.8
Psat4g049720 Pisum sativum HOM05D002683 ORTHO05D007757 6.3e-97 358.2 239 72.4
Aa31LG1G5830 Aethionema arabicum HOM05D002683 ORTHO05D007757 1.4e-91 340.5 255 65.9
SGA_v2.0_scaffold4G01974 Striga asiatica HOM05D002683 ORTHO05D007757 6.3e-89 331.6 323 53.6
Pp3c12_9660 Physcomitrium patens HOM05D002683 ORTHO05D007757 7.8e-87 324.7 310 50.6
Sed0002163 Sechium edule HOM05D002683 ORTHO05D007757 6.4e-81 305.1 233 63.9
Mapoly0027s0075 Marchantia polymorpha HOM05D002683 ORTHO05D007757 7.0e-80 301.6 309 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3324 Anthoceros agrestis HOM05D002683 ORTHO05D007757 2.7e-79 299.7 311 48.6
EL10Ac4g09493 Beta vulgaris HOM05D002683 ORTHO05D007757 8.3e-73 278.1 200 66.0
SMO119G0363 Selaginella moellendorffii HOM05D002683 ORTHO05D007757 1.3e-70 270.8 297 46.8
Atru.BG.140.p Acer truncatum HOM05D002683 ORTHO05D007757 5.6e-69 265.4 199 66.8
unitig_899.g14747 Utricularia gibba HOM05D002683 ORTHO05D007757 4.4e-66 255.8 321 45.8
Psat1g077200 Pisum sativum HOM05D002683 ORTHO05D007757 8.6e-62 241.5 177 67.2
Psat6g200880 Pisum sativum HOM05D002683 ORTHO05D007757 4.4e-58 229.2 149 73.8
PGSC0003DMG400002792 Solanum tuberosum HOM05D002683 ORTHO05D007757 6.6e-54 215.3 141 73.0
Zm00001eb028570 Zea mays HOM05D002683 ORTHO05D007757 2.9e-49 199.9 150 62.0
Cre01.g046150 Chlamydomonas reinhardtii HOM05D002683 ORTHO05D007757 4.3e-45 186.0 311 35.0
PRCOL_00004757 Prasinoderma coloniale HOM05D002683 ORTHO05D007757 2.6e-42 176.8 273 36.3
VMungo0251G2911 Vigna mungo HOM05D002683 ORTHO05D007757 2.9e-41 173.3 103 74.8
Ca_28747_v3 Cicer arietinum L. HOM05D002683 ORTHO05D007757 6.0e-39 165.6 253 35.6
Lj5A325T77 Lonicera japonica HOM05D002683 ORTHO05D007757 6.0e-39 165.6 177 55.4
CBR_g23088 Chara braunii HOM05D002683 ORTHO05D007757 2.2e-33 147.1 176 40.9
Psat0ss2010g0040 Pisum sativum HOM05D002683 ORTHO05D007757 4.2e-32 142.9 87 73.6
arahy.Tifrunner.gnm1.ann1.P173NJ Arachis hypogaea HOM05D002683 ORTHO05D007757 3.3e-29 133.3 140 50.7
Cre07.g342920 Chlamydomonas reinhardtii HOM05D005623 ORTHO05D007130 3.8e-25 119.8 301 26.9
SEGI_39504 Sequoiadendron giganteum HOM05D002683 ORTHO05D007757 1.4e-24 117.9 70 75.7
Mapoly0025s0122 Marchantia polymorpha HOM05D005623 ORTHO05D007130 2.5e-24 117.1 299 26.8
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 3.2e-24 116.7 293 28.7
Pp3c22_16460 Physcomitrium patens HOM05D005623 ORTHO05D007130 3.0e-22 110.2 299 26.4
Sc14g0000790 Simmondsia chinensis HOM05D005623 ORTHO05D007130 3.0e-22 110.2 299 27.1
MD04G1191800 Malus domestica HOM05D002683 ORTHO05D007757 6.7e-22 109.0 107 53.3
PRCOL_00000211 Prasinoderma coloniale HOM05D005623 ORTHO05D007130 6.7e-22 109.0 301 26.6
Aa31LG1G5820 Aethionema arabicum HOM05D002683 ORTHO05D007757 1.5e-21 107.8 73 68.5
MBI04_g11706_MAGBIO Magnolia biondii HOM05D005623 ORTHO05D007130 1.9e-21 107.5 358 24.6
MCO08G350 Micromonas commoda HOM05D005623 ORTHO05D007130 3.3e-21 106.7 291 28.2
Os02g0224400 Oryza sativa ssp. japonica HOM05D005623 ORTHO05D007130 4.3e-21 106.3 356 25.3
THA.LOC104814603 Tarenaya hassleriana HOM05D005623 ORTHO05D007130 4.3e-21 106.3 358 24.6
AagrBONN_evm.TU.Sc2ySwM_117.2163 Anthoceros agrestis HOM05D005623 ORTHO05D007130 5.7e-21 105.9 299 26.1
TWI34G0204 Tripterygium wilfordii HOM05D005623 ORTHO05D007130 7.4e-21 105.5 335 25.4
FAN23G2436 Fragaria x ananassa HOM05D005623 ORTHO05D007130 9.7e-21 105.1 354 25.1
FAN26G2999 Fragaria x ananassa HOM05D005623 ORTHO05D007130 1.3e-20 104.8 354 24.9
Ca_17399_v3 Cicer arietinum L. HOM05D005623 ORTHO05D007130 1.6e-20 104.4 335 25.1
Cc06_g11060 Coffea canephora HOM05D005623 ORTHO05D007130 1.6e-20 104.4 299 25.4
FvH4_1g06970 Fragaria vesca HOM05D005623 ORTHO05D007130 1.6e-20 104.4 355 25.1
FAN19G1723 Fragaria x ananassa HOM05D005623 ORTHO05D007130 1.6e-20 104.4 355 25.1
CSS0001651 Camellia sinensis var. sinensis HOM05D005623 ORTHO05D007130 4.8e-20 102.8 356 25.3
Zm00001eb239790 Zea mays HOM05D005623 ORTHO05D007130 4.8e-20 102.8 296 25.7
FAN26G0941 Fragaria x ananassa HOM05D005623 ORTHO05D007130 6.3e-20 102.4 354 24.6
MBI16_g12463_MAGBIO Magnolia biondii HOM05D005623 ORTHO05D007130 6.3e-20 102.4 345 25.5
Aa31LG2G20980 Aethionema arabicum HOM05D005623 ORTHO05D007130 8.2e-20 102.1 299 26.4
Lj4g0010059 Lotus japonicus HOM05D005623 ORTHO05D007130 1.4e-19 101.3 335 23.6
Medtr8g101730 Medicago truncatula HOM05D005623 ORTHO05D007130 1.8e-19 100.9 335 25.4
Prupe.7G213700 Prunus persica HOM05D005623 ORTHO05D007130 1.8e-19 100.9 359 25.3
MD15G1203700 Malus domestica HOM05D005623 ORTHO05D007130 2.4e-19 100.5 359 25.6
Solyc07g026960.3 Solanum lycopersicum HOM05D005623 ORTHO05D007130 2.4e-19 100.5 359 25.3
MSTRG.6040 Avicennia marina HOM05D005623 ORTHO05D007130 4.1e-19 99.8 299 25.8
Migut.J00444 Erythranthe guttata HOM05D005623 ORTHO05D007130 4.1e-19 99.8 359 25.1
COL.COLO4_18232 Corchorus olitorius HOM05D005623 ORTHO05D007130 5.3e-19 99.4 354 24.0
RcHm_v2.0_Chr2g0092921 Rosa chinensis HOM05D005623 ORTHO05D007130 6.9e-19 99.0 354 23.7
TPR.G25466 Trifolium pratense HOM05D005623 ORTHO05D007130 6.9e-19 99.0 319 25.4
Peaxi162Scf00264g00083 Petunia axillaris HOM05D005623 ORTHO05D007130 9.0e-19 98.6 354 23.7
TAR624G0131 Trochodendron aralioides HOM05D005623 ORTHO05D007130 9.0e-19 98.6 299 26.4
Actinidia25269 Actinidia chinensis HOM05D005623 ORTHO05D007130 1.2e-18 98.2 333 25.5
QL02p063259 Quercus lobata HOM05D005623 ORTHO05D007130 1.5e-18 97.8 350 24.6
CANSAT56G1243 Cannabis sativa HOM05D005623 ORTHO05D007130 3.4e-18 96.7 356 24.2
Dinv42293 Davidia involucrata HOM05D005623 ORTHO05D007130 3.4e-18 96.7 347 23.9
Lalb_Chr05g0223571 Lupinus albus HOM05D005623 ORTHO05D007130 4.5e-18 96.3 299 26.1
Lalb_Chr16g0390941 Lupinus albus HOM05D005623 ORTHO05D007130 7.7e-18 95.5 299 25.1
Gohir.D06G069700 Gossypium hirsutum HOM05D005623 ORTHO05D007130 1.0e-17 95.1 351 24.8
Gorai.010G081300 Gossypium raimondii HOM05D005623 ORTHO05D007130 1.0e-17 95.1 351 24.8
Nn8g38917 Nelumbo nucifera HOM05D005623 ORTHO05D007130 1.3e-17 94.7 352 24.7
Thecc.09G093300 Theobroma cacao HOM05D005623 ORTHO05D007130 1.7e-17 94.4 299 25.4
ECA234G3237 Erigeron canadensis HOM05D005623 ORTHO05D007130 2.2e-17 94.0 356 21.6
Oeu000326.2 Olea europaea HOM05D005623 ORTHO05D007130 3.8e-17 93.2 274 25.5
Psat7g019640 Pisum sativum HOM05D005623 ORTHO05D007130 5.0e-17 92.8 273 26.4
SGA_v2.0_scaffold10G05202 Striga asiatica HOM05D005623 ORTHO05D007130 1.4e-16 91.3 331 25.1
SEGI_10559 Sequoiadendron giganteum HOM05D002683 ORTHO05D007757 1.6e-15 87.8 77 55.8
Gohir.A06G071000 Gossypium hirsutum HOM05D005623 ORTHO05D007130 7.9e-15 85.5 353 23.5
Nitab4.5_0007297g0030 Nicotiana tabacum HOM05D005623 ORTHO05D007130 2.3e-14 84.0 273 24.9
Haze_25882 Corylus avellana HOM05D005623 ORTHO05D007130 3.0e-14 83.6 355 23.9
Cre02.g083065 Chlamydomonas reinhardtii HOM05D005623 ORTHO05D007130 5.1e-14 82.8 227 26.4
Cfa003118 Carpinus fangiana HOM05D005623 ORTHO05D007130 6.7e-14 82.4 271 24.4
Rhsim05G0035400 Rhododendron simsii HOM05D005623 ORTHO05D007130 6.3e-12 75.9 318 24.5
arahy.Tifrunner.gnm1.ann1.BMR8EL Arachis hypogaea HOM05D002683 ORTHO05D026899 1.3e-09 68.2 57 59.6
arahy.Tifrunner.gnm1.ann1.79TZ61 Arachis hypogaea HOM05D030332 ORTHO05D026899 8.5e-09 65.5 57 56.1
MCO14G489 Micromonas commoda HOM05D001474 ORTHO05D001461 7.9e-07 58.9 197 24.4
arahy.Tifrunner.gnm1.ann1.V65UZ0 Arachis hypogaea HOM05D004200 ORTHO05D004996 3.0e-06 57.0 36 69.4
Lj4A313G21 Lonicera japonica HOM05D005623 ORTHO05D007130 5.1e-06 56.2 155 27.1


User provided reference genes

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