Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0002F.1_g002330 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 4.7e-229 797.7 469 100.0
Hma1.2p1_0002F.1_g002320 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 8.0e-104 381.7 206 97.6
Actinidia10993 Actinidia chinensis HOM05D006668 ORTHO05D008252 1.0e-90 338.2 487 45.8
TAR627G0647 Trochodendron aralioides HOM05D006668 ORTHO05D008252 2.1e-83 313.9 489 45.2
vmacro12351 Vaccinium macrocarpon HOM05D006668 ORTHO05D008252 3.5e-83 313.2 536 42.9
GSVIVG01020613001 Vitis vinifera HOM05D006668 ORTHO05D008252 1.7e-82 310.8 483 46.0
QL08p040692 Quercus lobata HOM05D006668 ORTHO05D008252 3.9e-82 309.7 487 45.0
COL.COLO4_07343 Corchorus olitorius HOM05D006668 ORTHO05D008252 8.6e-82 308.5 482 47.5
Rhsim06G0136200 Rhododendron simsii HOM05D006668 ORTHO05D008252 1.6e-80 304.3 503 44.3
Manes.12G086300 Manihot esculenta HOM05D006668 ORTHO05D008252 3.5e-75 286.6 482 43.2
Cpa.g.sc165.1 Carica papaya HOM05D006668 ORTHO05D008252 6.0e-75 285.8 471 42.3
Oeu036086.1 Olea europaea HOM05D006668 ORTHO05D008252 7.8e-75 285.4 472 43.9
Thecc.02G187500 Theobroma cacao HOM05D006668 ORTHO05D008252 1.9e-73 280.8 477 45.5
Prupe.2G094200 Prunus persica HOM05D006668 ORTHO05D008252 7.3e-73 278.9 479 41.8
Cfa014669 Carpinus fangiana HOM05D006668 ORTHO05D008252 6.8e-71 272.3 476 44.7
Duzib132G0616 Durio zibethinus HOM05D006668 ORTHO05D008252 8.9e-71 271.9 473 45.0
Atru.chr6.2861 Acer truncatum HOM05D006668 ORTHO05D008252 1.2e-70 271.6 481 41.6
Cc05_g07800 Coffea canephora HOM05D006668 ORTHO05D008252 2.0e-70 270.8 474 41.8
Nn1g06398 Nelumbo nucifera HOM05D006668 ORTHO05D008252 1.7e-69 267.7 419 46.3
Peaxi162Scf00189g00018 Petunia axillaris HOM05D006668 ORTHO05D008252 8.4e-69 265.4 480 40.8
MD15G1126800 Malus domestica HOM05D006668 ORTHO05D008252 2.1e-67 260.8 478 41.0
Gohir.A08G243900 Gossypium hirsutum HOM05D006668 ORTHO05D008252 1.7e-66 257.7 472 43.6
Ciclev10015198m.g Citrus clementina HOM05D006668 ORTHO05D008252 1.9e-65 254.2 513 39.8
TWI59G1373 Tripterygium wilfordii HOM05D006668 ORTHO05D008252 2.5e-65 253.8 482 40.7
Gorai.004G282700 Gossypium raimondii HOM05D006668 ORTHO05D008252 2.1e-64 250.8 473 42.7
DCAR_009761 Daucus carota HOM05D006668 ORTHO05D008252 5.3e-63 246.1 472 40.3
Gohir.D08G264800 Gossypium hirsutum HOM05D006668 ORTHO05D008252 3.4e-62 243.4 473 42.5
RcHm_v2.0_Chr7g0225261 Rosa chinensis HOM05D006668 ORTHO05D008252 8.4e-61 238.8 480 40.0
PSO675G8266 Papaver somniferum HOM05D006668 ORTHO05D008252 3.0e-58 230.3 487 38.2
Aqoxy1G02297 Aquilegia oxysepala HOM05D006668 ORTHO05D008252 6.6e-58 229.2 522 36.8
FAN08G3049 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.5e-57 228.0 478 41.0
PSO541G3384 Papaver somniferum HOM05D006668 ORTHO05D008252 1.5e-57 228.0 491 38.1
Glyma.06G287100 Glycine max HOM05D006668 ORTHO05D008252 1.9e-57 227.6 489 38.0
CANSAT54G0862 Cannabis sativa HOM05D006668 ORTHO05D008252 3.3e-57 226.9 472 38.1
FvH4_5g30510 Fragaria vesca HOM05D006668 ORTHO05D008252 1.3e-56 224.9 475 41.1
Lalb_Chr03g0029681 Lupinus albus HOM05D006668 ORTHO05D008252 1.6e-56 224.6 488 36.7
Glyma.12G119000 Glycine max HOM05D006668 ORTHO05D008252 2.1e-56 224.2 487 38.4
FAN13G2061 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.4e-55 221.5 476 40.3
CiPaw.03G182600 Carya illinoinensis HOM05D006668 ORTHO05D008252 2.4e-55 220.7 482 37.6
Potri.017G017200 Populus trichocarpa HOM05D006668 ORTHO05D008252 6.9e-55 219.2 505 43.0
FAN18G2410 Fragaria x ananassa HOM05D006668 ORTHO05D008252 9.0e-55 218.8 475 39.8
Sopen07g027510 Solanum pennellii HOM05D006668 ORTHO05D008252 2.2e-53 214.2 472 36.9
PGSC0003DMG400009383 Solanum tuberosum HOM05D006668 ORTHO05D008252 5.4e-52 209.5 479 37.2
arahy.Tifrunner.gnm1.ann1.Y4MWM5 Arachis hypogaea HOM05D006668 ORTHO05D008252 1.2e-51 208.4 491 35.4
Lj3g0004052 Lotus japonicus HOM05D006668 ORTHO05D008252 3.5e-51 206.8 367 39.5
Sed0009608 Sechium edule HOM05D006668 ORTHO05D008252 4.6e-51 206.5 408 39.2
SalBow7G4646 Salvia bowleyana HOM05D006668 ORTHO05D008252 7.9e-51 205.7 478 35.1
PGR142G0029 Punica granatum HOM05D006668 ORTHO05D008252 2.3e-50 204.1 477 37.3
CAN.G1808.7 Capsicum annuum HOM05D006668 ORTHO05D008252 1.3e-48 198.4 394 39.3
Sp2g08980 Schrenkiella parvula HOM05D006668 ORTHO05D008252 1.6e-48 198.0 492 35.0
SGA_v2.0_scaffold70G23480 Striga asiatica HOM05D006668 ORTHO05D008252 1.6e-48 198.0 473 37.0
Sc12g0003270 Simmondsia chinensis HOM05D006668 ORTHO05D008252 2.8e-48 197.2 486 35.6
Sabra17G0013400 Salix brachista HOM05D006668 ORTHO05D008252 8.1e-48 195.7 491 42.0
MBI06_g42697_MAGBIO Magnolia biondii HOM05D006668 ORTHO05D008252 4.0e-47 193.4 511 35.0
Solyc07g053560.3 Solanum lycopersicum HOM05D006668 ORTHO05D008252 4.0e-47 193.4 472 35.0
Ca_18916_v3 Cicer arietinum L. HOM05D006668 ORTHO05D008252 1.2e-46 191.8 486 33.7
Lsat_1_v5_gn_8_69500 Lactuca sativa HOM05D006668 ORTHO05D008252 1.3e-45 188.3 336 40.8
SGA_v2.0_scaffold58G20553 Striga asiatica HOM05D006668 ORTHO05D008252 1.3e-45 188.3 463 36.5
Aa31LG5G3090 Aethionema arabicum HOM05D006668 ORTHO05D008252 8.4e-45 185.7 510 35.1
VMungo0037G0001 Vigna mungo HOM05D006668 ORTHO05D008252 1.9e-44 184.5 486 35.0
BcaC04g21861 Brassica carinata HOM05D006668 ORTHO05D008252 2.5e-44 184.1 481 35.8
BolC9t55549H Brassica oleracea HOM05D006668 ORTHO05D008252 2.5e-44 184.1 334 41.3
Medtr4g079100 Medicago truncatula HOM05D006668 ORTHO05D008252 2.5e-44 184.1 491 33.0
MELO3C018863.2 Cucumis melo HOM05D006668 ORTHO05D008252 4.2e-44 183.3 410 35.1
C09p26530 Brassica napus HOM05D006668 ORTHO05D008252 9.3e-44 182.2 334 41.0
Haze_13261 Corylus avellana HOM05D006668 ORTHO05D008252 2.1e-43 181.0 171 57.3
Migut.M00152 Erythranthe guttata HOM05D006668 ORTHO05D008252 2.1e-43 181.0 322 40.4
TPR.G14253 Trifolium pratense HOM05D006668 ORTHO05D008252 3.5e-43 180.3 504 32.3
THA.LOC104801157 Tarenaya hassleriana HOM05D006668 ORTHO05D008252 4.6e-43 179.9 477 34.4
Phvul.010G089800 Phaseolus vulgaris HOM05D006668 ORTHO05D008252 7.9e-43 179.1 483 33.7
HanXRQChr17g0555041 Helianthus annuus HOM05D006668 ORTHO05D008252 1.0e-42 178.7 277 45.8
Psat7g136840 Pisum sativum HOM05D006668 ORTHO05D008252 1.8e-42 177.9 490 33.3
ClCG03G006150 Citrullus lanatus HOM05D006668 ORTHO05D008252 8.7e-42 175.6 398 35.9
Oeu016899.1 Olea europaea HOM05D006668 ORTHO05D008252 1.9e-41 174.5 304 41.1
Dinv06849 Davidia involucrata HOM05D006668 ORTHO05D008252 3.3e-41 173.7 321 42.4
Nitab4.5_0000621g0040 Nicotiana tabacum HOM05D006668 ORTHO05D008252 5.7e-41 172.9 494 34.0
AL8G15870 Arabidopsis lyrata HOM05D006668 ORTHO05D008252 7.4e-41 172.6 485 34.2
CARHR179120 Cardamine hirsuta HOM05D006668 ORTHO05D008252 1.3e-40 171.8 208 51.4
Thhalv10003234m.g Eutrema salsugineum HOM05D006668 ORTHO05D008252 1.6e-40 171.4 476 35.1
ClCG00G003780 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.8e-40 169.9 400 36.2
ClCG02G002300 Citrullus lanatus HOM05D006668 ORTHO05D008252 4.8e-40 169.9 400 36.2
CsaV3_7G003140 Cucumis sativus L. HOM05D006668 ORTHO05D008252 6.2e-40 169.5 479 32.2
Nitab4.5_0006091g0020 Nicotiana tabacum HOM05D006668 ORTHO05D008252 1.1e-39 168.7 492 32.9
MSTRG.5024 Avicennia marina HOM05D006668 ORTHO05D008252 1.4e-39 168.3 504 32.3
A09p20930 Brassica napus HOM05D006668 ORTHO05D008252 5.3e-39 166.4 482 33.2
BraA09t37693Z Brassica rapa HOM05D006668 ORTHO05D008252 5.3e-39 166.4 482 33.2
ECA232G0319 Erigeron canadensis HOM05D006668 ORTHO05D008252 2.0e-38 164.5 477 32.5
Hund01006 Selenicereus undatus HOM05D006668 ORTHO05D008252 2.6e-38 164.1 493 31.0
Carub.0008s0437 Capsella rubella HOM05D006668 ORTHO05D008252 5.8e-38 162.9 485 33.6
CDE10G0622 Ceratophyllum demersum HOM05D006668 ORTHO05D008252 5.0e-37 159.8 476 31.9
BcaC06g31649 Brassica carinata HOM05D006668 ORTHO05D008252 2.5e-36 157.5 241 44.8
AT5G44150 Arabidopsis thaliana HOM05D006668 ORTHO05D008252 4.2e-36 156.8 475 33.1
CSS0030364 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.6e-35 154.8 144 61.8
Eucgr.K01063 Eucalyptus grandis HOM05D006668 ORTHO05D008252 6.1e-35 152.9 492 33.5
CSS0015867 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.0e-34 152.1 131 66.4
Duzib248G1400 Durio zibethinus HOM05D006668 ORTHO05D008252 6.7e-34 149.4 342 35.4
HPP92_023281 Vanilla planifolia HOM05D006668 ORTHO05D008252 5.0e-29 133.3 420 32.9
BcaC04g21859 Brassica carinata HOM05D006668 ORTHO05D008252 4.2e-28 130.2 190 48.4
AUR62036068 Chenopodium quinoa HOM05D006668 ORTHO05D008252 2.0e-25 121.3 532 28.6
EL10Ac9g20828 Beta vulgaris HOM05D006668 ORTHO05D008252 2.2e-24 117.9 541 28.3
Zm00001eb295870 Zea mays HOM05D006668 ORTHO05D008252 2.2e-24 117.9 412 30.3
Os05g0564000 Oryza sativa ssp. japonica HOM05D006668 ORTHO05D008252 5.9e-22 109.8 201 36.8
Sed0015399 Sechium edule HOM05D006668 ORTHO05D008252 2.9e-21 107.5 398 28.6
SEGI_30235 Sequoiadendron giganteum HOM05D006668 ORTHO05D008252 1.4e-20 105.1 582 27.7
ATR0602G055 Amborella trichopoda HOM05D006668 ORTHO05D008252 9.1e-15 85.9 252 31.3
CSS0037366 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.6e-14 85.1 266 33.8
CSS0027561 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 6.5e-13 79.7 266 32.0
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 2.3e-10 71.2 154 39.0
Ah.01g015540 Amaranthus hybridus HOM05D006668 ORTHO05D008252 2.8e-08 64.3 140 37.9
Sabra07G0109400 Salix brachista HOM05D006668 ORTHO05D008252 2.4e-07 61.2 112 38.4
Actinidia11116 Actinidia chinensis HOM05D006668 ORTHO05D008252 3.1e-07 60.8 228 32.0
Haze_13262 Corylus avellana HOM05D006668 ORTHO05D008252 4.1e-07 60.5 264 29.9
ATR0602G285 Amborella trichopoda HOM05D006668 ORTHO05D008252 7.0e-07 59.7 116 39.7
unitig_46.g18247 Utricularia gibba HOM05D006668 ORTHO05D008252 1.6e-06 58.5 329 28.0
CSS0005901 Camellia sinensis var. sinensis HOM05D054010 ORTHO05D008252 2.0e-06 58.2 33 78.8
CSS0008520 Camellia sinensis var. sinensis HOM05D054010 ORTHO05D008252 2.0e-06 58.2 33 78.8
Mapoly0050s0110 Marchantia polymorpha HOM05D006668 ORTHO05D008252 2.7e-06 57.8 371 26.1


User provided reference genes

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