Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.2e-222 776.2 383 100.0
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 4.4e-185 651.4 366 85.5
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 2.2e-184 649.0 367 85.6
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 8.3e-184 647.1 345 90.4
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 9.2e-183 643.7 369 84.3
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.2e-182 643.3 368 84.2
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 6.0e-182 641.0 369 84.3
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 3.9e-181 638.3 365 82.7
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 5.1e-181 637.9 343 88.9
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 8.6e-181 637.1 366 84.4
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.1e-180 636.7 366 84.4
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 3.3e-180 635.2 367 81.7
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.6e-180 634.4 369 84.3
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.6e-180 634.4 369 84.3
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 4.7e-179 631.3 370 81.6
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 6.2e-179 630.9 344 88.1
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 3.1e-178 628.6 347 86.7
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 3.1e-178 628.6 386 80.3
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 6.8e-178 627.5 358 84.1
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.0e-177 625.9 362 83.1
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 3.4e-177 625.2 360 83.1
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 4.4e-177 624.8 365 81.6
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 7.6e-177 624.0 365 83.0
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 1.3e-176 623.2 347 86.2
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 2.2e-176 622.5 364 82.7
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 4.9e-176 621.3 353 83.9
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 4.9e-176 621.3 366 81.4
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 8.4e-176 620.5 365 82.2
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.1e-175 620.2 365 81.4
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.9e-175 619.4 365 81.6
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 3.2e-175 618.6 347 84.7
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 4.2e-175 618.2 376 80.1
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 7.1e-175 617.5 352 83.5
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 7.1e-175 617.5 347 84.7
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.2e-174 616.7 356 81.7
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.2e-174 616.7 363 79.1
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 3.5e-174 615.1 351 82.3
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 3.5e-174 615.1 369 81.0
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 4.6e-174 614.8 343 85.1
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 7.8e-174 614.0 346 83.2
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.0e-173 613.6 358 84.1
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.3e-173 613.2 352 82.1
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 2.3e-173 612.5 368 80.2
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.3e-173 612.5 353 81.9
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.3e-173 612.5 343 85.1
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 3.0e-173 612.1 367 80.9
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 3.0e-173 612.1 351 82.9
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 3.0e-173 612.1 347 83.9
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 5.1e-173 611.3 352 83.0
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 6.6e-173 610.9 351 82.6
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 6.6e-173 610.9 354 82.5
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-172 609.8 352 82.1
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.5e-172 609.8 369 80.2
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 2.5e-172 609.0 351 82.6
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 2.5e-172 609.0 352 82.7
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.5e-172 609.0 344 84.0
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 3.3e-172 608.6 343 84.5
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.3e-172 608.2 367 80.1
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 5.6e-172 607.8 363 79.3
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 9.6e-172 607.1 352 81.5
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 9.6e-172 607.1 351 82.3
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.6e-171 606.3 342 85.1
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.6e-171 606.3 376 79.0
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.8e-171 605.5 343 84.0
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 4.8e-171 604.7 368 77.7
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 6.2e-171 604.4 344 83.4
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 6.2e-171 604.4 365 79.7
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 6.2e-171 604.4 345 83.8
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.1e-171 604.0 345 82.9
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 8.1e-171 604.0 348 83.6
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 8.1e-171 604.0 347 83.6
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 5.3e-170 601.3 348 81.9
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 5.3e-170 601.3 341 84.2
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 6.9e-170 600.9 344 82.0
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 9.0e-170 600.5 348 83.3
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.2e-169 600.1 340 85.3
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.6e-169 599.0 366 79.0
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 3.4e-169 598.6 365 79.5
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.9e-168 595.5 347 81.6
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.9e-168 595.5 343 81.9
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 4.9e-168 594.7 344 81.7
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 6.4e-168 594.3 358 79.9
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 6.4e-168 594.3 374 77.8
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.1e-167 593.6 341 83.6
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.4e-167 592.4 344 82.0
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 3.2e-167 592.0 341 82.7
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 5.4e-167 591.3 341 82.1
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 3.5e-166 588.6 340 81.8
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 3.5e-166 588.6 350 81.4
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 7.9e-166 587.4 341 82.1
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.3e-165 586.6 414 70.3
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.7e-165 586.3 341 81.5
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 2.3e-165 585.9 454 66.1
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 6.6e-165 584.3 341 82.1
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 7.3e-164 580.9 344 82.3
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 4.8e-163 578.2 390 74.9
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 6.2e-163 577.8 343 80.2
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 1.3e-160 570.1 472 62.9
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 4.9e-160 568.2 346 78.0
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 2.5e-156 555.8 375 73.9
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 4.3e-156 555.1 345 75.7
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 9.0e-154 547.4 381 70.6
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 3.4e-153 545.4 373 74.8
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.3e-149 533.5 304 83.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.1e-146 523.9 349 73.9
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 5.3e-146 521.5 346 72.8
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 6.9e-146 521.2 343 73.2
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 7.2e-143 511.1 340 72.1
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 9.0e-138 494.2 377 67.6
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 3.4e-137 492.3 270 88.1
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.1e-130 470.7 259 85.3
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 6.9e-130 468.0 329 66.9
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.0e-128 461.8 255 85.1
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 9.4e-127 457.6 408 60.5
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.7e-123 446.8 315 72.1
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.8e-123 446.0 315 71.7
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.1e-122 444.1 340 63.2
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 5.3e-114 415.2 232 83.2
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.9e-113 411.8 368 61.1
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 4.2e-111 405.6 228 86.4
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.2e-108 397.5 360 60.8
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 1.7e-107 393.7 339 55.8
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 9.4e-103 377.9 245 73.1
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 9.2e-98 361.3 347 52.7
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 8.6e-96 354.8 254 71.7
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 1.1e-95 354.4 354 52.0
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 5.6e-95 352.1 212 82.5
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 2.4e-90 336.7 190 85.8
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.1e-79 301.2 176 81.2
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 4.7e-78 295.8 222 69.4
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 5.1e-64 249.2 152 80.9
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 2.8e-62 243.4 156 74.4
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 2.4e-53 213.8 118 83.1
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.3e-51 208.0 345 38.6
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.9e-51 206.8 118 80.5
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 2.1e-41 174.1 94 88.3
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 6.0e-41 172.6 248 44.0
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.0e-40 171.8 99 85.9
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.9e-35 153.7 358 32.4
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 7.9e-25 119.0 81 74.1
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 4.3e-23 113.2 261 34.1
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 7.4e-23 112.5 95 57.9
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.8e-22 110.5 171 42.1
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 3.2e-18 97.1 87 56.3
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.2e-12 78.6 45 80.0
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.5e-10 70.9 41 73.2


User provided reference genes

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