Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 4.0e-133 478.0 231 100.0
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 5.2e-56 221.9 220 49.5
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 8.9e-56 221.1 218 50.9
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 8.9e-56 221.1 218 50.9
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 8.9e-56 221.1 218 50.9
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 8.9e-56 221.1 218 50.9
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.5e-55 220.3 223 50.7
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.5e-55 220.3 223 50.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-55 220.3 218 50.9
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.0e-55 219.9 220 50.9
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.0e-55 219.9 233 45.5
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 4.4e-55 218.8 223 50.7
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 4.4e-55 218.8 234 47.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 5.8e-55 218.4 224 47.8
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 7.5e-55 218.0 218 50.5
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 7.5e-55 218.0 223 48.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 9.9e-55 217.6 218 49.1
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 9.9e-55 217.6 218 49.5
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 9.9e-55 217.6 231 48.9
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.7e-54 216.9 222 48.2
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.7e-54 216.9 218 48.6
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 2.2e-54 216.5 223 49.8
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.2e-54 216.5 231 46.3
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.2e-54 216.5 228 46.9
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.2e-54 216.5 233 47.2
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 2.9e-54 216.1 218 49.5
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.9e-54 216.1 233 48.5
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.9e-54 216.1 223 49.8
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 2.9e-54 216.1 220 50.0
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.9e-54 216.1 231 45.9
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.7e-54 215.7 218 48.2
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 3.7e-54 215.7 218 50.0
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.7e-54 215.7 218 50.5
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 3.7e-54 215.7 223 48.4
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 4.9e-54 215.3 220 50.0
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 4.9e-54 215.3 220 50.0
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 4.9e-54 215.3 218 48.6
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 6.4e-54 214.9 218 50.9
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 6.4e-54 214.9 218 50.5
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 6.4e-54 214.9 218 50.0
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 6.4e-54 214.9 223 48.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.4e-54 214.9 225 47.6
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 8.3e-54 214.5 218 49.5
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 8.3e-54 214.5 218 49.1
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.1e-53 214.2 218 49.1
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.4e-53 213.8 230 47.4
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.9e-53 213.4 222 46.8
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.9e-53 213.4 223 46.2
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.9e-53 213.4 228 48.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 2.4e-53 213.0 223 48.4
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.4e-53 213.0 222 46.8
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.4e-53 213.0 223 48.0
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 2.4e-53 213.0 218 49.5
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 3.2e-53 212.6 218 49.1
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 3.2e-53 212.6 231 45.9
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 3.2e-53 212.6 218 49.5
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 3.2e-53 212.6 218 48.2
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 3.2e-53 212.6 234 47.0
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.2e-53 212.6 218 49.1
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 3.2e-53 212.6 218 49.1
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.2e-53 212.6 232 45.3
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 4.1e-53 212.2 223 46.6
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.1e-53 212.2 218 47.7
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.1e-53 212.2 218 47.7
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 5.4e-53 211.8 218 50.0
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 5.4e-53 211.8 218 49.1
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.4e-53 211.8 218 48.6
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 5.4e-53 211.8 235 47.2
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 5.4e-53 211.8 223 48.0
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 7.1e-53 211.5 224 46.9
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 7.1e-53 211.5 232 44.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.1e-53 211.5 218 47.7
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 9.2e-53 211.1 226 47.3
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 9.2e-53 211.1 231 45.0
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 9.2e-53 211.1 231 47.6
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.2e-52 210.7 218 49.5
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.2e-52 210.7 233 45.1
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.6e-52 210.3 218 47.7
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.6e-52 210.3 230 46.5
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.6e-52 210.3 223 46.2
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.1e-52 209.9 218 47.7
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.1e-52 209.9 218 49.1
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.1e-52 209.9 218 47.7
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 2.1e-52 209.9 218 48.2
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 2.1e-52 209.9 218 47.7
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.5e-52 209.1 218 49.5
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.5e-52 209.1 218 47.2
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.5e-52 209.1 218 48.2
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 3.5e-52 209.1 223 45.3
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 4.6e-52 208.8 232 44.8
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 4.6e-52 208.8 218 47.7
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 4.6e-52 208.8 218 46.8
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 6.0e-52 208.4 233 44.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 7.8e-52 208.0 218 48.2
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.8e-52 208.0 218 48.6
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 7.8e-52 208.0 223 47.5
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 7.8e-52 208.0 221 46.6
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 7.8e-52 208.0 218 47.2
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 7.8e-52 208.0 238 45.4
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.0e-51 207.6 226 46.9
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.0e-51 207.6 218 46.3
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.0e-51 207.6 226 46.0
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.3e-51 207.2 217 50.2
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.3e-51 207.2 218 47.2
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.3e-51 207.2 226 46.0
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.7e-51 206.8 220 46.8
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.7e-51 206.8 218 47.7
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.7e-51 206.8 218 46.8
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.7e-51 206.8 223 47.1
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.7e-51 206.8 223 48.0
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.3e-51 206.5 229 45.4
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 2.3e-51 206.5 218 47.7
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 2.3e-51 206.5 218 46.3
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 3.0e-51 206.1 218 47.2
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 3.9e-51 205.7 231 45.5
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 3.9e-51 205.7 223 45.7
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.9e-51 205.7 231 44.2
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 5.1e-51 205.3 218 46.8
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 5.1e-51 205.3 218 46.3
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 5.1e-51 205.3 218 47.7
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.1e-51 205.3 218 46.3
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 5.1e-51 205.3 225 46.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 5.1e-51 205.3 218 46.8
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 5.1e-51 205.3 218 48.2
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 6.6e-51 204.9 218 46.8
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 6.6e-51 204.9 229 45.4
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 6.6e-51 204.9 218 47.2
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 6.6e-51 204.9 218 46.8
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 8.6e-51 204.5 218 46.3
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.6e-51 204.5 218 45.9
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.1e-50 204.1 218 46.8
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.5e-50 203.8 226 46.0
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 1.5e-50 203.8 218 46.8
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.9e-50 203.4 218 46.8
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.9e-50 203.4 218 45.9
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.9e-50 203.4 229 47.2
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.9e-50 203.4 218 45.9
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.5e-50 203.0 220 45.9
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 3.3e-50 202.6 218 46.3
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 4.3e-50 202.2 218 47.2
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 4.3e-50 202.2 218 45.9
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 5.6e-50 201.8 218 45.9
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 7.3e-50 201.4 218 46.3
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 9.5e-50 201.1 221 44.3
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.2e-49 200.7 221 45.2
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.2e-49 200.7 230 43.9
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.6e-49 200.3 218 46.3
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 3.6e-49 199.1 179 54.2
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 2.4e-48 196.4 232 44.8
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 4.0e-48 195.7 218 45.0
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 3.2e-45 186.0 224 43.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 4.7e-41 172.2 161 52.2
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.1e-37 161.0 162 47.5
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.0e-35 154.5 173 42.8
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.9e-29 133.7 144 46.5
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 7.9e-28 128.3 144 45.1
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 8.1e-25 118.2 218 34.9
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.6e-17 94.0 89 53.9
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.4e-16 90.9 216 30.1
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.5e-15 85.9 129 38.0
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.3e-14 84.3 90 46.7
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.3e-11 73.6 63 52.4


User provided reference genes

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