Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 3.6e-166 588.2 296 100.0
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 1.1e-18 98.2 109 42.2
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 1.9e-18 97.4 109 43.1
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 5.5e-18 95.9 109 41.3
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 5.5e-18 95.9 109 45.0
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 9.5e-18 95.1 109 40.4
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 9.5e-18 95.1 109 40.4
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 1.2e-17 94.7 109 39.4
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 1.2e-17 94.7 109 40.4
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 1.2e-17 94.7 109 39.4
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 1.6e-17 94.4 109 40.4
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 2.8e-17 93.6 109 39.4
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 2.8e-17 93.6 109 39.4
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 2.8e-17 93.6 109 39.4
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 2.8e-17 93.6 109 39.4
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 2.8e-17 93.6 109 39.4
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 2.8e-17 93.6 109 39.4
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 3.6e-17 93.2 109 41.3
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 3.6e-17 93.2 109 41.3
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 3.6e-17 93.2 132 38.6
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 4.7e-17 92.8 109 39.4
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 4.7e-17 92.8 152 36.2
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 39.4
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 39.4
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 39.4
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 39.4
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 39.4
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 39.4
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 38.5
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 38.5
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 6.1e-17 92.4 109 39.4
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 1.0e-16 91.7 109 39.4
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 1.4e-16 91.3 109 38.5
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 1.4e-16 91.3 104 41.3
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 1.4e-16 91.3 104 42.3
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 1.4e-16 91.3 136 36.8
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 1.4e-16 91.3 109 38.5
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 1.8e-16 90.9 109 38.5
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 1.8e-16 90.9 109 37.6
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 1.8e-16 90.9 109 40.4
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 1.8e-16 90.9 109 37.6
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 1.8e-16 90.9 109 38.5
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 1.8e-16 90.9 104 40.4
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 2.3e-16 90.5 109 38.5
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 2.3e-16 90.5 109 39.4
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.3e-16 90.5 104 39.4
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 3.0e-16 90.1 109 43.1
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 3.0e-16 90.1 107 37.4
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 3.0e-16 90.1 109 39.4
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 3.0e-16 90.1 109 39.4
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 3.0e-16 90.1 109 39.4
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 4.0e-16 89.7 109 37.6
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 4.0e-16 89.7 109 37.6
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 4.0e-16 89.7 109 37.6
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 4.0e-16 89.7 109 39.4
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 4.0e-16 89.7 109 39.4
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 4.0e-16 89.7 109 39.4
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 4.0e-16 89.7 109 38.5
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 5.2e-16 89.4 132 36.4
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 5.2e-16 89.4 109 38.5
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 5.2e-16 89.4 109 38.5
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 6.8e-16 89.0 104 40.4
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 6.8e-16 89.0 109 38.5
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 1.2e-15 88.2 112 37.5
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 1.2e-15 88.2 109 37.6
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 1.2e-15 88.2 109 37.6
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 1.5e-15 87.8 109 35.8
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 1.5e-15 87.8 109 35.8
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 2.0e-15 87.4 109 37.6
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 2.6e-15 87.0 109 37.6
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.6e-15 87.0 109 37.6
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 2.6e-15 87.0 109 37.6
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 2.6e-15 87.0 109 37.6
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 4.4e-15 86.3 109 39.4
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 4.4e-15 86.3 102 38.2
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 4.4e-15 86.3 104 39.4
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 4.4e-15 86.3 109 37.6
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 5.7e-15 85.9 109 40.4
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 9.8e-15 85.1 165 37.6
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 9.8e-15 85.1 108 39.8
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 9.8e-15 85.1 103 38.8
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 1.3e-14 84.7 103 38.8
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 2.2e-14 84.0 123 36.6
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 3.7e-14 83.2 96 41.7
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 8.3e-14 82.0 102 37.3
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 1.4e-13 81.3 95 41.1
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 1.4e-13 81.3 111 42.3
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 5.4e-13 79.3 95 40.0
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 7.0e-13 79.0 90 40.0
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.0e-12 77.4 110 36.4
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.0e-12 77.4 110 36.4
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 2.7e-12 77.0 89 41.6
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 7.8e-12 75.5 166 31.3
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 1.0e-11 75.1 92 43.5
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 1.3e-11 74.7 109 34.9
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 1.3e-11 74.7 90 40.0
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 1.7e-11 74.3 90 40.0
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 6.6e-11 72.4 109 33.9
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 6.6e-11 72.4 95 38.9
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 4.3e-10 69.7 96 37.5
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 3.6e-09 66.6 90 36.7
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.0e-08 65.1 90 38.9
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 2.3e-08 63.9 164 29.3
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 6.8e-08 62.4 71 40.8
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 6.8e-08 62.4 71 40.8
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 1.2e-07 61.6 85 36.5
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 3.4e-07 60.1 74 40.5


User provided reference genes

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