Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.7e-148 528.1 254 100.0
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 4.7e-58 228.8 304 41.4
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.1e-58 228.4 305 42.6
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 6.1e-58 228.4 302 42.7
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 6.1e-58 228.4 301 42.5
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 1.4e-57 227.3 305 42.3
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.4e-57 227.3 305 42.3
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.4e-57 227.3 305 42.3
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 1.4e-57 227.3 302 43.0
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.8e-57 226.9 305 42.3
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.3e-57 226.5 306 42.2
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.3e-57 226.5 307 41.4
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 2.3e-57 226.5 308 43.2
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 2.3e-57 226.5 311 43.1
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 4.0e-57 225.7 310 40.3
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.0e-57 225.7 305 42.0
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.0e-57 225.7 305 42.0
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 4.0e-57 225.7 308 43.5
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 4.0e-57 225.7 302 42.7
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 5.2e-57 225.3 304 42.1
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 5.2e-57 225.3 308 41.6
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 6.8e-57 224.9 304 41.8
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 6.8e-57 224.9 304 41.8
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 6.8e-57 224.9 311 42.8
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 6.8e-57 224.9 304 41.4
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 8.9e-57 224.6 301 41.9
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 8.9e-57 224.6 311 42.1
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 8.9e-57 224.6 306 42.2
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 8.9e-57 224.6 306 42.2
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 8.9e-57 224.6 304 43.1
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.2e-56 224.2 306 42.2
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-56 224.2 301 41.2
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.2e-56 224.2 307 42.3
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.2e-56 224.2 307 42.7
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.2e-56 224.2 304 41.8
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.2e-56 224.2 307 42.3
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.2e-56 224.2 303 41.9
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.2e-56 224.2 307 42.0
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.5e-56 223.8 308 41.6
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.5e-56 223.8 306 41.2
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.5e-56 223.8 308 42.2
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 2.0e-56 223.4 308 41.2
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.0e-56 223.4 311 41.5
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.0e-56 223.4 311 41.5
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 2.6e-56 223.0 307 42.0
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 2.6e-56 223.0 304 41.8
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.6e-56 223.0 308 42.2
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.6e-56 223.0 307 42.0
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 2.6e-56 223.0 312 42.3
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 2.6e-56 223.0 304 42.4
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.6e-56 223.0 305 42.3
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 3.4e-56 222.6 307 42.0
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 3.4e-56 222.6 301 41.2
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 3.4e-56 222.6 301 41.2
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 3.4e-56 222.6 305 41.0
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 3.4e-56 222.6 307 42.7
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 3.4e-56 222.6 307 41.7
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.4e-56 222.6 306 42.2
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.4e-56 222.6 305 42.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 3.4e-56 222.6 305 42.3
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 3.4e-56 222.6 306 42.5
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 4.4e-56 222.2 307 41.0
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 4.4e-56 222.2 311 40.8
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 4.4e-56 222.2 306 42.2
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 4.4e-56 222.2 308 42.2
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.7e-56 221.9 304 41.4
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 5.7e-56 221.9 287 43.9
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.7e-56 221.9 305 42.3
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 5.7e-56 221.9 304 41.1
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 5.7e-56 221.9 305 42.0
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 7.5e-56 221.5 301 42.5
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 7.5e-56 221.5 286 43.0
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 7.5e-56 221.5 290 42.8
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 7.5e-56 221.5 311 42.1
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 9.8e-56 221.1 305 41.0
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 9.8e-56 221.1 307 41.0
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 9.8e-56 221.1 305 41.6
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.3e-55 220.7 299 43.1
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.3e-55 220.7 304 42.1
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.3e-55 220.7 308 41.2
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 1.3e-55 220.7 304 41.4
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.3e-55 220.7 308 40.9
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.3e-55 220.7 306 41.5
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.3e-55 220.7 311 41.2
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.7e-55 220.3 312 40.7
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.7e-55 220.3 314 39.8
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.2e-55 219.9 304 41.1
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 2.2e-55 219.9 308 41.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.2e-55 219.9 304 41.1
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 2.2e-55 219.9 307 40.4
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 2.2e-55 219.9 307 40.7
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.2e-55 219.9 308 40.3
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.9e-55 219.5 308 39.9
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 2.9e-55 219.5 302 40.4
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 3.7e-55 219.2 308 40.6
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 3.7e-55 219.2 304 40.5
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 4.9e-55 218.8 307 40.7
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.9e-55 218.8 306 41.2
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 6.4e-55 218.4 308 41.6
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 6.4e-55 218.4 269 42.8
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 6.4e-55 218.4 303 40.6
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 8.3e-55 218.0 306 40.2
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 8.3e-55 218.0 304 40.8
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.1e-54 217.6 308 41.2
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-54 217.2 305 40.7
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.4e-54 217.2 303 40.6
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.8e-54 216.9 310 40.6
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 1.8e-54 216.9 308 41.2
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.4e-54 216.5 308 40.6
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 2.4e-54 216.5 297 41.4
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.2e-54 216.1 329 40.1
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 3.2e-54 216.1 303 40.3
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 5.4e-54 215.3 303 37.6
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 5.4e-54 215.3 311 40.8
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 5.4e-54 215.3 304 40.5
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 7.0e-54 214.9 308 41.2
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 7.0e-54 214.9 310 40.3
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.2e-53 214.2 308 40.6
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.7e-53 213.0 285 40.7
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 3.5e-53 212.6 307 41.7
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 7.8e-53 211.5 307 40.7
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 3.0e-52 209.5 296 40.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.6e-52 208.4 323 39.0
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.5e-51 207.2 329 38.0
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.5e-48 197.2 294 39.1
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 9.8e-48 194.5 308 39.3
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 2.9e-47 193.0 377 34.2
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 5.4e-46 188.7 287 39.7
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 6.0e-45 185.3 283 38.2
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-43 181.0 250 40.8
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 1.9e-43 180.3 284 37.7
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 3.3e-43 179.5 278 38.5
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.1e-42 176.8 325 34.8
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 8.1e-42 174.9 279 36.2
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 1.7e-39 167.2 164 50.0
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-37 160.6 303 35.0
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.1e-35 154.5 260 36.9
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 3.3e-35 152.9 457 28.0
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 8.1e-34 148.3 159 48.4
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 4.1e-30 136.0 272 32.0
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 3.9e-28 129.4 222 36.0
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 4.3e-27 125.9 98 58.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.6e-26 122.9 117 52.1
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.5e-24 117.5 148 45.9
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 7.1e-22 108.6 144 41.0
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 7.1e-22 108.6 144 41.0
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 9.3e-22 108.2 93 53.8
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 4.6e-21 105.9 286 28.0
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 5.1e-20 102.4 161 38.5
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.4e-17 94.4 247 27.1
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 6.9e-17 92.0 180 31.7
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.0e-17 91.7 108 43.5
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 2.0e-16 90.5 110 43.6
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 9.9e-16 88.2 194 32.5
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 5.4e-14 82.4 109 39.4
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 9.3e-14 81.6 104 42.3
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 1.2e-13 81.3 67 55.2
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 2.1e-13 80.5 109 38.5
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 2.1e-13 80.5 109 38.5
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 7.9e-13 78.6 89 41.6
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 6.7e-12 75.5 162 32.1
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 5.3e-09 65.9 44 63.6
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 4.5e-08 62.8 76 42.1
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 3.8e-07 59.7 110 31.8
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 3.8e-07 59.7 109 32.1
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 3.8e-07 59.7 109 32.1
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.4e-06 57.8 140 27.1
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 1.9e-06 57.4 245 24.9
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 2.4e-06 57.0 202 27.7
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 5.5e-06 55.8 109 29.4
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.1e-06 55.5 39 59.0
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 9.3e-06 55.1 54 50.0


User provided reference genes

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