Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27306 Corylus avellana HOM05D003555 ORTHO05D163602 3.8e-168 594.7 296 100.0
Phvul.004G070900 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 3.1e-61 239.6 296 42.9
VMungo0464G0001 Vigna mungo HOM05D003555 ORTHO05D004542 3.1e-61 239.6 296 42.2
Actinidia25536 Actinidia chinensis HOM05D003555 ORTHO05D004542 6.9e-61 238.4 296 41.2
THA.LOC104825653 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 6.9e-61 238.4 296 41.9
Glyma.16G146600 Glycine max HOM05D003555 ORTHO05D004542 9.0e-61 238.0 296 41.9
CAN.G257.127 Capsicum annuum HOM05D003555 ORTHO05D004542 2.6e-60 236.5 299 42.5
Duzib264G0281 Durio zibethinus HOM05D003555 ORTHO05D004542 2.6e-60 236.5 297 42.4
Atru.chr6.2636 Acer truncatum HOM05D003555 ORTHO05D004542 3.4e-60 236.1 296 41.6
FAN05G2121 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.4e-60 236.1 296 42.2
Glyma.02G065500 Glycine max HOM05D003555 ORTHO05D004542 3.4e-60 236.1 296 41.2
MD17G1008500 Malus domestica HOM05D003555 ORTHO05D004542 3.4e-60 236.1 296 41.2
HanXRQChr16g0528421 Helianthus annuus HOM05D003555 ORTHO05D004542 4.5e-60 235.7 296 41.9
Prupe.3G312200 Prunus persica HOM05D003555 ORTHO05D004542 5.9e-60 235.3 296 41.6
Hund04735 Selenicereus undatus HOM05D003555 ORTHO05D004542 7.6e-60 235.0 291 42.3
TWI34G1938 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 1.0e-59 234.6 296 41.2
FAN02G1454 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.3e-59 234.2 296 41.6
Gohir.A05G334700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.3e-59 234.2 296 41.9
Thecc.04G045300 Theobroma cacao HOM05D003555 ORTHO05D004542 1.3e-59 234.2 296 40.9
GSVIVG01033006001 Vitis vinifera HOM05D003555 ORTHO05D004542 1.3e-59 234.2 296 41.9
THA.LOC104805306 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 1.7e-59 233.8 296 40.9
CiPaw.04G001900 Carya illinoinensis HOM05D003555 ORTHO05D004542 2.2e-59 233.4 296 40.5
Lj1g0000762 Lotus japonicus HOM05D003555 ORTHO05D004542 2.2e-59 233.4 296 41.6
MD09G1004500 Malus domestica HOM05D003555 ORTHO05D004542 2.2e-59 233.4 296 40.9
Peaxi162Scf00171g01130 Petunia axillaris HOM05D003555 ORTHO05D004542 2.2e-59 233.4 298 42.6
VMungo1383G1114 Vigna mungo HOM05D003555 ORTHO05D004542 2.2e-59 233.4 296 41.6
Actinidia18318 Actinidia chinensis HOM05D003555 ORTHO05D004542 2.9e-59 233.0 296 40.9
Ah.07g207280 Amaranthus hybridus HOM05D003555 ORTHO05D004542 2.9e-59 233.0 296 42.6
arahy.Tifrunner.gnm1.ann1.N4MBCZ Arachis hypogaea HOM05D003555 ORTHO05D004542 3.8e-59 232.6 296 41.2
Cc05_g01690 Coffea canephora HOM05D003555 ORTHO05D004542 3.8e-59 232.6 298 40.3
Sopen03g028540 Solanum pennellii HOM05D003555 ORTHO05D004542 3.8e-59 232.6 298 41.9
CDE05G2896 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 5.0e-59 232.3 295 41.4
COL.COLO4_10540 Corchorus olitorius HOM05D003555 ORTHO05D004542 5.0e-59 232.3 296 40.5
Os05g0593100 Oryza sativa ssp. japonica HOM05D003555 ORTHO05D004542 5.0e-59 232.3 299 41.8
Solyc03g097800.4 Solanum lycopersicum HOM05D003555 ORTHO05D004542 5.0e-59 232.3 298 41.9
Ah.13g068520 Amaranthus hybridus HOM05D003555 ORTHO05D004542 6.5e-59 231.9 296 41.9
ATR0582G027 Amborella trichopoda HOM05D003555 ORTHO05D004542 6.5e-59 231.9 296 40.9
Duzib187G1504 Durio zibethinus HOM05D003555 ORTHO05D004542 6.5e-59 231.9 296 40.5
Manes.04G091900 Manihot esculenta HOM05D003555 ORTHO05D004542 6.5e-59 231.9 296 40.9
Potri.001G322500 Populus trichocarpa HOM05D003555 ORTHO05D004542 6.5e-59 231.9 296 40.9
Sp1g11410 Schrenkiella parvula HOM05D003555 ORTHO05D004542 6.5e-59 231.9 296 41.9
TWI60G1549 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 6.5e-59 231.9 296 40.9
FvH4_6g54180 Fragaria vesca HOM05D003555 ORTHO05D004542 8.5e-59 231.5 296 41.9
FAN09G3428 Fragaria x ananassa HOM05D003555 ORTHO05D004542 8.5e-59 231.5 296 41.9
FAN14G0379 Fragaria x ananassa HOM05D003555 ORTHO05D004542 8.5e-59 231.5 296 41.9
Lsat_1_v5_gn_4_84140 Lactuca sativa HOM05D003555 ORTHO05D004542 8.5e-59 231.5 296 41.9
RcHm_v2.0_Chr2g0176361 Rosa chinensis HOM05D003555 ORTHO05D004542 8.5e-59 231.5 296 40.5
AT1G12840 Arabidopsis thaliana HOM05D003555 ORTHO05D004542 1.1e-58 231.1 296 41.9
CAN.G637.54 Capsicum annuum HOM05D003555 ORTHO05D004542 1.1e-58 231.1 298 41.6
Cfa007176 Carpinus fangiana HOM05D003555 ORTHO05D004542 1.1e-58 231.1 296 40.9
DCAR_021412 Daucus carota HOM05D003555 ORTHO05D004542 1.1e-58 231.1 298 41.9
arahy.Tifrunner.gnm1.ann1.HQ0MCX Arachis hypogaea HOM05D003555 ORTHO05D004542 1.4e-58 230.7 296 40.9
Carub.0001s1258 Capsella rubella HOM05D003555 ORTHO05D004542 1.4e-58 230.7 296 41.6
PSO478G0165 Papaver somniferum HOM05D003555 ORTHO05D004542 1.4e-58 230.7 296 41.2
BcaB08g34247 Brassica carinata HOM05D003555 ORTHO05D004542 1.9e-58 230.3 296 42.2
CANSAT64G0789 Cannabis sativa HOM05D003555 ORTHO05D004542 1.9e-58 230.3 296 40.9
THA.LOC104823995 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 1.9e-58 230.3 296 41.9
Actinidia36835 Actinidia chinensis HOM05D003555 ORTHO05D004542 2.5e-58 229.9 296 40.9
Ciclev10015638m.g Citrus clementina HOM05D003555 ORTHO05D004542 2.5e-58 229.9 296 40.5
CsaV3_5G020170 Cucumis sativus L. HOM05D003555 ORTHO05D004542 2.5e-58 229.9 297 40.1
Phvul.001G086700 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 2.5e-58 229.9 296 41.2
TAR374G1733 Trochodendron aralioides HOM05D003555 ORTHO05D004542 2.5e-58 229.9 296 40.9
MBI11_g08158_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 3.2e-58 229.6 296 41.9
QL02p062748 Quercus lobata HOM05D003555 ORTHO05D004542 3.2e-58 229.6 296 40.9
MELO3C025061.2 Cucumis melo HOM05D003555 ORTHO05D004542 4.2e-58 229.2 297 40.1
Gohir.D04G073600 Gossypium hirsutum HOM05D003555 ORTHO05D004542 4.2e-58 229.2 296 41.9
Dinv11219 Davidia involucrata HOM05D003555 ORTHO05D004542 5.5e-58 228.8 296 40.5
Thhalv10007948m.g Eutrema salsugineum HOM05D003555 ORTHO05D004542 5.5e-58 228.8 296 41.6
Gorai.012G082900 Gossypium raimondii HOM05D003555 ORTHO05D004542 5.5e-58 228.8 296 41.2
Pp3c13_14220 Physcomitrium patens HOM05D003555 ORTHO05D004542 5.5e-58 228.8 293 41.3
AL1G24480 Arabidopsis lyrata HOM05D003555 ORTHO05D004542 7.2e-58 228.4 296 41.6
BcaC05g25110 Brassica carinata HOM05D003555 ORTHO05D004542 7.2e-58 228.4 296 41.6
Glyma.19G101000 Glycine max HOM05D003555 ORTHO05D004542 7.2e-58 228.4 297 41.8
TPR.G17457 Trifolium pratense HOM05D003555 ORTHO05D004542 7.2e-58 228.4 298 41.3
A06p08830 Brassica napus HOM05D003555 ORTHO05D004542 9.3e-58 228.0 296 41.2
BraA06t24078Z Brassica rapa HOM05D003555 ORTHO05D004542 9.3e-58 228.0 296 41.2
AUR62015995 Chenopodium quinoa HOM05D003555 ORTHO05D004542 9.3e-58 228.0 296 39.9
ECA232G4336 Erigeron canadensis HOM05D003555 ORTHO05D004542 9.3e-58 228.0 298 41.3
Glyma.16G050200 Glycine max HOM05D003555 ORTHO05D004542 9.3e-58 228.0 296 40.9
Lalb_Chr14g0363981 Lupinus albus HOM05D003555 ORTHO05D004542 9.3e-58 228.0 296 41.2
GSVIVG01008626001 Vitis vinifera HOM05D003555 ORTHO05D004542 9.3e-58 228.0 296 41.6
Zm00001eb345260 Zea mays HOM05D003555 ORTHO05D004542 9.3e-58 228.0 299 40.8
BcaC05g25150 Brassica carinata HOM05D003555 ORTHO05D004542 1.2e-57 227.6 298 41.6
Migut.D01225 Erythranthe guttata HOM05D003555 ORTHO05D004542 1.2e-57 227.6 298 41.3
DCAR_016355 Daucus carota HOM05D003555 ORTHO05D004542 1.6e-57 227.3 297 41.4
Dinv23202 Davidia involucrata HOM05D003555 ORTHO05D004542 1.6e-57 227.3 296 40.5
Gohir.A11G063400 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.6e-57 227.3 296 40.2
Lj5A90G23 Lonicera japonica HOM05D003555 ORTHO05D004542 1.6e-57 227.3 296 40.2
TAR629G2425 Trochodendron aralioides HOM05D003555 ORTHO05D004542 1.6e-57 227.3 296 40.9
EL10Ac3g05664 Beta vulgaris HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 40.9
BcaC07g40270 Brassica carinata HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 41.6
BcaC07g41676 Brassica carinata HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 41.6
A09p63580 Brassica napus HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 41.6
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 41.6
BolC8t50972H Brassica oleracea HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 41.6
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 41.6
CSS0044185 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 40.5
CARHR013160 Cardamine hirsuta HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 40.9
Hma1.2p1_1187F.1_g265140 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 2.1e-57 226.9 296 39.9
MSTRG.22881 Avicennia marina HOM05D003555 ORTHO05D004542 2.7e-57 226.5 298 40.9
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 2.7e-57 226.5 296 41.6
CSS0013918 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 2.7e-57 226.5 296 40.2
Zm00001eb297260 Zea mays HOM05D003555 ORTHO05D004542 2.7e-57 226.5 299 40.1
ClCG01G008140 Citrullus lanatus HOM05D003555 ORTHO05D004542 3.6e-57 226.1 297 39.7
Gohir.D11G067700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 3.6e-57 226.1 296 40.2
C05p10440 Brassica napus HOM05D003555 ORTHO05D004542 4.6e-57 225.7 298 41.3
BolC5t29790H Brassica oleracea HOM05D003555 ORTHO05D004542 4.6e-57 225.7 298 41.3
Lalb_Chr24g0403201 Lupinus albus HOM05D003555 ORTHO05D004542 4.6e-57 225.7 296 40.5
Sed0000891 Sechium edule HOM05D003555 ORTHO05D004542 4.6e-57 225.7 297 40.1
Psat0s1497g0040 Pisum sativum HOM05D003555 ORTHO05D004542 6.1e-57 225.3 298 40.9
vmacro19161 Vaccinium macrocarpon HOM05D003555 ORTHO05D004542 6.1e-57 225.3 296 40.2
MSTRG.11256 Avicennia marina HOM05D003555 ORTHO05D004542 7.9e-57 224.9 298 40.6
C08p15700 Brassica napus HOM05D003555 ORTHO05D004542 1.0e-56 224.6 296 40.5
A08p32590 Brassica napus HOM05D003555 ORTHO05D004542 1.3e-56 224.2 296 40.5
BolC8t49197H Brassica oleracea HOM05D003555 ORTHO05D004542 1.3e-56 224.2 296 40.5
BraA08t35183Z Brassica rapa HOM05D003555 ORTHO05D004542 1.3e-56 224.2 296 40.5
PGR083G2609 Punica granatum HOM05D003555 ORTHO05D004542 1.3e-56 224.2 298 39.3
BcaB03g13163 Brassica carinata HOM05D003555 ORTHO05D004542 1.8e-56 223.8 296 40.5
Eucgr.G01943 Eucalyptus grandis HOM05D003555 ORTHO05D004542 1.8e-56 223.8 299 41.1
Aa31LG1G1920 Aethionema arabicum HOM05D003555 ORTHO05D004542 2.3e-56 223.4 297 40.7
C08p33730 Brassica napus HOM05D003555 ORTHO05D004542 2.3e-56 223.4 296 41.2
Lsat_1_v5_gn_6_50360 Lactuca sativa HOM05D003555 ORTHO05D004542 2.3e-56 223.4 291 41.6
Oeu058121.1 Olea europaea HOM05D003555 ORTHO05D004542 2.3e-56 223.4 299 40.8
Sed0008328 Sechium edule HOM05D003555 ORTHO05D004542 3.0e-56 223.0 297 39.7
Medtr7g083720 Medicago truncatula HOM05D003555 ORTHO05D004542 3.9e-56 222.6 298 40.3
Potri.017G061100 Populus trichocarpa HOM05D003555 ORTHO05D004542 3.9e-56 222.6 296 38.2
Hund11754 Selenicereus undatus HOM05D003555 ORTHO05D004542 3.9e-56 222.6 296 40.5
Hma1.2p1_1187F.1_g265130 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 5.1e-56 222.2 293 39.9
unitig_61.g26203 Utricularia gibba HOM05D003555 ORTHO05D004542 8.7e-56 221.5 298 40.3
Sc13g0008590 Simmondsia chinensis HOM05D003555 ORTHO05D004542 1.1e-55 221.1 296 39.2
Cpa.g.sc70.83 Carica papaya HOM05D003555 ORTHO05D004542 1.5e-55 220.7 291 40.5
Sabra17G0054300 Salix brachista HOM05D003555 ORTHO05D004542 4.3e-55 219.2 292 39.7
SalBow1G4818 Salvia bowleyana HOM05D003555 ORTHO05D004542 9.7e-55 218.0 298 40.3
Mapoly0126s0013 Marchantia polymorpha HOM05D003555 ORTHO05D004542 1.3e-54 217.6 296 37.8
SEGI_35214 Sequoiadendron giganteum HOM05D003555 ORTHO05D004542 1.3e-54 217.6 295 38.0
Manes.11G078200 Manihot esculenta HOM05D003555 ORTHO05D004542 1.6e-54 217.2 260 42.7
Duzib147G0304 Durio zibethinus HOM05D003555 ORTHO05D004542 4.8e-54 215.7 296 38.2
Lsat_1_v5_gn_4_84120 Lactuca sativa HOM05D003555 ORTHO05D004542 1.1e-53 214.5 265 43.4
Ca_08125_v3 Cicer arietinum L. HOM05D003555 ORTHO05D004542 1.4e-53 214.2 296 39.9
Zm00001eb163710 Zea mays HOM05D003555 ORTHO05D004542 3.1e-53 213.0 299 39.8
Nn5g27103 Nelumbo nucifera HOM05D003555 ORTHO05D004542 4.1e-53 212.6 294 38.4
TAR622G0101 Trochodendron aralioides HOM05D003555 ORTHO05D004542 6.9e-53 211.8 296 39.2
Nn4g22182 Nelumbo nucifera HOM05D003555 ORTHO05D004542 9.1e-53 211.5 292 39.4
COL.COLO4_13344 Corchorus olitorius HOM05D003555 ORTHO05D004542 2.6e-52 209.9 296 38.9
HPP92_022913 Vanilla planifolia HOM05D003555 ORTHO05D004542 2.6e-52 209.9 291 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2553 Anthoceros agrestis HOM05D003555 ORTHO05D004542 1.7e-51 207.2 297 39.4
Sabra16G0204700 Salix brachista HOM05D003555 ORTHO05D004542 1.7e-51 207.2 327 36.1
Sc25g0000460 Simmondsia chinensis HOM05D003555 ORTHO05D004542 5.0e-51 205.7 259 42.1
Haze_14935 Corylus avellana HOM05D003555 ORTHO05D004542 7.2e-50 201.8 355 34.1
SGA_v2.0_scaffold14G07035 Striga asiatica HOM05D003555 ORTHO05D004542 3.6e-49 199.5 298 37.6
Gorai.007G072500 Gossypium raimondii HOM05D003555 ORTHO05D004542 6.1e-49 198.7 253 41.5
MBI07_g40357_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 6.1e-49 198.7 295 38.3
SMO200G0006 Selaginella moellendorffii HOM05D003555 ORTHO05D004542 1.8e-48 197.2 294 37.1
Rhsim08G0195300 Rhododendron simsii HOM05D003555 ORTHO05D004542 5.7e-47 192.2 375 32.0
Cre06.g250250 Chlamydomonas reinhardtii HOM05D003555 ORTHO05D004542 1.8e-45 187.2 292 38.0
CDE05G1333 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 5.3e-45 185.7 295 36.9
MCO15G152 Micromonas commoda HOM05D003555 ORTHO05D004542 5.9e-44 182.2 307 34.5
Lj9A484G61 Lonicera japonica HOM05D003555 ORTHO05D004542 2.2e-43 180.3 242 40.9
Pp3c9_8980 Physcomitrium patens HOM05D003555 ORTHO05D004542 3.8e-43 179.5 295 36.3
ECA246G0182 Erigeron canadensis HOM05D003555 ORTHO05D004542 3.2e-42 176.4 232 40.9
Cfa026601 Carpinus fangiana HOM05D003555 ORTHO05D123537 5.5e-42 175.6 298 35.9
PRCOL_00003348 Prasinoderma coloniale HOM05D003555 ORTHO05D004542 7.2e-42 175.3 296 35.1
Nn3g16313 Nelumbo nucifera HOM05D003555 ORTHO05D004542 2.1e-41 173.7 294 34.7
AUR62021202 Chenopodium quinoa HOM05D003555 ORTHO05D004542 1.0e-40 171.4 246 39.4
CBR_g724 Chara braunii HOM05D003555 ORTHO05D004542 6.3e-38 162.2 192 44.3
Nitab4.5_0005207g0040 Nicotiana tabacum HOM05D003555 ORTHO05D004542 3.1e-37 159.8 218 40.4
Nitab4.5_0007858g0030 Nicotiana tabacum HOM05D003555 ORTHO05D004542 3.1e-37 159.8 213 41.3
Eucgr.G01949 Eucalyptus grandis HOM05D003555 ORTHO05D004542 2.0e-36 157.1 214 41.6
QL02p069938 Quercus lobata HOM05D003555 ORTHO05D004542 4.2e-34 149.4 296 31.4
Oeu058117.1 Olea europaea HOM05D003555 ORTHO05D004542 9.4e-34 148.3 307 33.2
HanXRQChr09g0273581 Helianthus annuus HOM05D003555 ORTHO05D004542 1.2e-28 131.3 214 36.9
Lsat_1_v5_gn_5_10760 Lactuca sativa HOM05D003555 ORTHO05D004542 4.5e-28 129.4 145 48.3
CSS0036109 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 7.7e-28 128.6 204 38.2
Actinidia08900 Actinidia chinensis HOM05D003555 ORTHO05D004542 9.4e-26 121.7 250 30.8
FAN09G3010 Fragaria x ananassa HOM05D003555 ORTHO05D004542 4.5e-12 76.3 86 40.7
Hma1.2p1_0403F.1_g145240 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 8.6e-11 72.0 138 32.6
BcaB01g02330 Brassica carinata HOM05D003555 ORTHO05D002990 2.0e-07 60.8 122 36.9


User provided reference genes

Program Settings