Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.7e-188 662.5 343 100.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.0e-108 397.5 432 53.0
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.0e-108 397.5 432 53.0
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.0e-108 397.5 432 53.0
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.0e-108 397.5 432 53.0
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.0e-108 397.5 432 53.0
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.0e-108 397.5 432 53.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.0e-108 397.5 432 53.0
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 6.3e-106 388.3 420 52.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 7.7e-104 381.3 432 51.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.5e-103 377.9 420 52.4
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-102 376.3 432 51.6
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.2e-102 375.6 420 52.1
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.2e-102 375.6 420 52.1
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.2e-102 375.6 420 52.1
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 9.4e-102 374.4 432 51.2
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.0e-100 370.9 432 50.9
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.4e-100 370.5 432 50.9
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 5.1e-100 368.6 432 50.7
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 2.5e-99 366.3 432 50.5
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 2.5e-99 366.3 432 50.5
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.8e-98 362.8 420 51.7
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 8.2e-98 361.3 432 50.0
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 8.2e-98 361.3 432 50.0
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 8.2e-98 361.3 432 50.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.8e-97 360.1 432 50.2
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 3.1e-97 359.4 432 49.8
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 5.3e-97 358.6 420 50.7
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 1.3e-95 354.0 403 52.4
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.3e-95 354.0 403 52.4
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.2e-95 353.2 373 54.2
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 1.8e-92 343.6 432 48.8
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 8.8e-92 341.3 379 52.5
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.7e-90 337.0 409 49.9
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.7e-90 335.9 420 49.3
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.7e-90 335.9 420 49.3
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.9e-87 326.2 424 48.6
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 8.5e-87 324.7 411 47.9
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.5e-87 324.7 366 52.7
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.2e-86 322.8 407 47.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.5e-83 313.9 352 52.3
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.7e-82 310.5 414 48.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.2e-82 310.1 338 53.8
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.1e-81 307.8 382 49.2
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 5.3e-81 305.4 307 57.7
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 9.4e-78 294.7 432 45.4
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 4.0e-76 289.3 333 52.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 8.8e-76 288.1 362 49.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.8e-73 280.4 357 48.5
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 5.9e-72 275.4 419 43.2
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-69 267.7 345 49.3
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 5.4e-65 252.3 385 42.3
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 4.5e-64 249.2 298 51.0
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.0e-60 238.0 273 52.0
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.2e-59 234.6 292 50.3
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.7e-58 230.7 247 54.7
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 7.3e-54 215.3 233 52.4
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.5e-54 214.9 278 48.6
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.0e-51 207.2 252 50.8
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.7e-50 204.1 200 56.0
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 2.2e-50 203.8 212 54.2
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.3e-50 201.8 199 55.8
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 8.3e-50 201.8 210 54.3
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 9.2e-49 198.4 240 48.8
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 6.0e-48 195.7 204 53.4
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 6.0e-48 195.7 204 53.4
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.1e-45 187.2 379 35.6
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.1e-44 184.9 228 49.1
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 4.4e-43 179.5 175 55.4
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-42 177.9 174 55.2
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 4.9e-42 176.0 175 54.9
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.1e-41 172.9 223 48.9
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.6e-40 171.0 271 40.2
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 4.6e-40 169.5 175 53.7
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.3e-39 167.9 459 34.4
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.8e-37 160.2 173 51.4
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 4.7e-37 159.5 233 45.1
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.3e-36 157.1 186 49.5
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.9e-36 155.2 214 43.9
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 9.9e-35 151.8 185 48.6
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-34 150.6 204 49.5
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-34 150.6 314 36.9
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 2.1e-32 144.1 227 45.4
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.3e-30 136.7 201 44.3
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 9.6e-30 135.2 294 33.0
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.7e-29 132.9 134 59.0
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.4e-25 121.3 144 45.8
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 1.4e-25 121.3 97 60.8
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.2e-24 118.2 121 57.0
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.2e-24 118.2 97 59.8
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 2.1e-24 117.5 97 58.8
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.7e-24 117.1 118 56.8
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 6.0e-24 115.9 110 58.2
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.0e-23 115.2 110 62.7
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.3e-23 114.8 110 62.7
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.7e-23 114.4 97 58.8
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.7e-23 114.4 97 58.8
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.7e-23 114.4 97 58.8
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 8.7e-23 112.1 143 44.1
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.3e-22 110.2 117 56.4
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 9.6e-22 108.6 144 45.8
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 2.1e-21 107.5 97 62.9
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 2.8e-21 107.1 135 49.6
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 4.8e-21 106.3 409 31.1
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.2e-19 101.7 101 58.4
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 9.9e-19 98.6 102 52.9
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.2e-18 97.4 159 41.5
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 8.4e-18 95.5 92 48.9
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 3.2e-17 93.6 94 46.8
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 4.2e-17 93.2 103 53.4
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 4.6e-16 89.7 81 56.8
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 2.5e-14 84.0 69 62.3
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.3e-14 83.2 161 37.9
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.3e-14 83.2 161 37.9
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-13 80.9 190 37.9
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 2.8e-13 80.5 84 59.5
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.8e-13 80.5 92 50.0
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 8.1e-13 79.0 85 50.6
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.3e-12 76.3 47 78.7
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.8e-11 72.8 91 42.9
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 3.8e-10 70.1 95 41.1
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-10 70.1 67 62.7
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-10 70.1 70 55.7
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 6.4e-10 69.3 152 36.8
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 1.4e-09 68.2 44 70.5
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 1.9e-09 67.8 54 50.0
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 1.6e-08 64.7 47 66.0
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-07 60.8 87 36.8
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 2.5e-06 57.4 82 42.7


User provided reference genes

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