Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27044 Corylus avellana HOM05D003675 ORTHO05D004318 3.6e-291 1004.2 511 100.0
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.5e-79 301.2 464 38.6
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 1.5e-79 301.2 464 38.8
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 5.7e-79 299.3 464 38.6
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 9.7e-79 298.5 468 38.5
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 2.2e-78 297.4 468 38.0
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 1.1e-77 295.0 468 37.8
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 1.1e-77 295.0 465 38.1
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 1.8e-77 294.3 465 38.3
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 1.8e-77 294.3 468 38.0
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 2.4e-77 293.9 468 37.8
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 3.1e-77 293.5 465 37.6
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 3.1e-77 293.5 465 37.8
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.1e-77 293.5 465 37.8
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.1e-77 293.5 465 37.8
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 3.1e-77 293.5 468 37.6
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 3.1e-77 293.5 464 38.4
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 4.1e-77 293.1 465 37.8
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 5.3e-77 292.7 465 38.1
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 5.3e-77 292.7 465 37.6
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 5.3e-77 292.7 467 38.1
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 5.3e-77 292.7 465 37.6
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 5.3e-77 292.7 465 37.6
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 7.0e-77 292.4 468 37.6
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 7.0e-77 292.4 465 37.4
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 9.1e-77 292.0 469 37.3
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.2e-76 291.6 465 38.1
Sc24g0001490 Simmondsia chinensis HOM05D003675 ORTHO05D004318 1.2e-76 291.6 465 37.6
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 1.6e-76 291.2 468 37.2
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 1.6e-76 291.2 468 37.4
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 1.6e-76 291.2 465 37.8
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 1.6e-76 291.2 465 37.8
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 2.6e-76 290.4 469 37.7
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 2.6e-76 290.4 466 38.0
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 2.6e-76 290.4 465 38.3
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 3.5e-76 290.0 468 37.2
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 3.5e-76 290.0 468 37.6
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 4.5e-76 289.7 468 37.0
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 4.5e-76 289.7 468 37.0
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 4.5e-76 289.7 465 37.8
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 5.9e-76 289.3 465 37.6
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 5.9e-76 289.3 465 37.4
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 7.7e-76 288.9 465 37.8
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 7.7e-76 288.9 468 37.4
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 7.7e-76 288.9 469 37.7
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 7.7e-76 288.9 465 38.1
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 7.7e-76 288.9 466 37.1
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 1.0e-75 288.5 465 37.6
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 1.3e-75 288.1 465 37.8
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 1.3e-75 288.1 465 37.4
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 1.3e-75 288.1 465 37.6
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 1.3e-75 288.1 465 37.2
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 1.3e-75 288.1 466 37.3
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 1.7e-75 287.7 465 36.8
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 1.7e-75 287.7 469 37.5
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 1.7e-75 287.7 469 36.9
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 2.2e-75 287.3 466 37.1
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 2.2e-75 287.3 465 37.4
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 2.2e-75 287.3 468 36.8
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 2.2e-75 287.3 465 37.2
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.2e-75 287.3 469 37.1
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.2e-75 287.3 465 37.4
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.2e-75 287.3 469 37.1
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 2.2e-75 287.3 469 37.1
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 2.2e-75 287.3 471 37.8
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 2.2e-75 287.3 469 36.2
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 2.2e-75 287.3 465 36.8
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 2.9e-75 287.0 465 37.4
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 2.9e-75 287.0 465 37.6
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 2.9e-75 287.0 465 37.0
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 2.9e-75 287.0 465 37.0
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 2.9e-75 287.0 465 37.4
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 3.8e-75 286.6 465 37.0
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 3.8e-75 286.6 465 37.6
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 3.8e-75 286.6 464 37.1
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 5.0e-75 286.2 465 36.6
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 5.0e-75 286.2 465 36.6
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 5.0e-75 286.2 465 36.6
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 5.0e-75 286.2 466 37.3
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 5.0e-75 286.2 471 37.4
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 5.0e-75 286.2 468 36.8
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 5.0e-75 286.2 465 37.8
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 5.0e-75 286.2 469 37.1
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 6.5e-75 285.8 470 37.2
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 6.5e-75 285.8 465 37.4
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 8.5e-75 285.4 469 36.0
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-74 285.0 465 36.8
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-74 285.0 465 36.8
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 1.1e-74 285.0 465 36.8
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 1.1e-74 285.0 465 36.8
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.1e-74 285.0 474 36.5
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 1.1e-74 285.0 469 36.0
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 1.9e-74 284.3 468 37.4
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 1.9e-74 284.3 465 37.0
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 1.9e-74 284.3 461 37.7
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.5e-74 283.9 468 36.5
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 4.2e-74 283.1 468 36.5
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 4.2e-74 283.1 464 36.6
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 4.2e-74 283.1 465 37.2
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 5.5e-74 282.7 465 37.0
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 7.2e-74 282.3 470 38.3
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 7.2e-74 282.3 465 37.2
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 7.2e-74 282.3 464 37.1
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 9.4e-74 282.0 468 36.3
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 1.6e-73 281.2 465 36.6
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 1.6e-73 281.2 465 37.6
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 1.6e-73 281.2 471 36.9
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 2.7e-73 280.4 465 37.0
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.7e-73 280.4 465 36.6
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.7e-73 280.4 476 36.6
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.7e-73 280.4 476 36.6
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 2.7e-73 280.4 474 36.5
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 3.6e-73 280.0 468 36.5
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 4.7e-73 279.6 465 36.3
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 6.1e-73 279.3 478 36.4
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 1.0e-72 278.5 480 36.0
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 1.4e-72 278.1 466 35.4
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 1.8e-72 277.7 465 36.6
arahy.Tifrunner.gnm1.ann1.119T42 Arachis hypogaea HOM05D003675 ORTHO05D004318 4.0e-72 276.6 456 37.1
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 5.2e-72 276.2 468 36.3
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 2.0e-71 274.2 449 37.4
PRCOL_00004754 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 3.7e-70 270.0 470 35.3
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 6.3e-70 269.2 465 35.9
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 3.1e-69 266.9 465 34.8
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 3.1e-69 266.9 476 37.2
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 4.1e-69 266.5 506 34.4
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 1.6e-68 264.6 512 33.8
SEGI_15305 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 1.6e-68 264.6 449 35.6
SMO304G0144 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 1.2e-65 255.0 470 33.0
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 1.8e-64 251.1 285 47.4
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 2.3e-64 250.8 274 47.8
Mapoly0078s0036 Marchantia polymorpha HOM05D003675 ORTHO05D004318 5.2e-64 249.6 472 31.8
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 3.4e-63 246.9 456 35.1
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 3.4e-63 246.9 469 35.2
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 1.7e-62 244.6 465 34.4
PRCOL_00002134 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 4.8e-62 243.0 519 30.4
AagrBONN_evm.TU.Sc2ySwM_362.1613 Anthoceros agrestis HOM05D003675 ORTHO05D004318 6.3e-62 242.7 467 33.4
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.6e-60 238.0 262 48.9
Haze_05889 Corylus avellana HOM05D003675 ORTHO05D004318 2.7e-60 237.3 281 45.6
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 2.7e-60 237.3 262 49.2
Pp3c14_11040 Physcomitrium patens HOM05D003675 ORTHO05D004318 5.9e-60 236.1 477 30.8
Pp3c17_10600 Physcomitrium patens HOM05D003675 ORTHO05D004318 5.0e-59 233.0 464 30.6
Pp3c1_28340 Physcomitrium patens HOM05D003675 ORTHO05D004318 6.5e-59 232.6 463 31.1
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 1.1e-58 231.9 258 49.2
MCO15G428 Micromonas commoda HOM05D003675 ORTHO05D004318 4.2e-58 229.9 480 31.7
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.5e-55 221.5 255 47.1
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.7e-54 218.0 289 43.3
SHI20675 Sapria himalayana HOM05D003675 ORTHO05D000023 1.7e-54 218.0 401 33.9
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 1.2e-52 211.8 465 31.4
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.2e-49 201.8 465 30.3
RcHm_v2.0_Chr5g0015811 Rosa chinensis HOM05D003675 ORTHO05D004318 8.9e-48 195.7 201 51.7
Nitab4.5_0005814g0040 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.2e-47 195.3 278 41.0
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.3e-46 191.8 216 48.6
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 3.5e-44 183.7 464 29.1
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 4.3e-42 176.8 461 30.4
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 5.4e-37 159.8 228 41.2
CBR_g27771 Chara braunii HOM05D003675 ORTHO05D004318 1.6e-36 158.3 298 31.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.0e-35 155.6 172 47.1
Lj2A328G59 Lonicera japonica HOM05D003675 ORTHO05D004318 5.6e-34 149.8 465 25.6
Haze_05681 Corylus avellana HOM05D003675 ORTHO05D004318 6.4e-30 136.3 251 36.3
HPP92_010709 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.0e-27 129.0 173 46.2
FAN25G0162 Fragaria x ananassa HOM05D003675 ORTHO05D004318 7.1e-21 106.3 255 28.6
CDE04G1522 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.6e-20 105.1 263 28.5
Gohir.D02G239100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.3e-19 102.1 254 27.6
Haze_12671 Corylus avellana HOM05D003675 ORTHO05D004318 2.3e-19 101.3 155 39.4
Haze_12675 Corylus avellana HOM05D003675 ORTHO05D004318 2.3e-19 101.3 155 39.4
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 8.7e-19 99.4 255 27.8
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 7.1e-13 79.7 112 41.1
Haze_18108 Corylus avellana HOM05D001121 ORTHO05D001256 6.6e-11 73.2 171 31.6
arahy.Tifrunner.gnm1.ann1.DS3C7B Arachis hypogaea HOM05D003675 ORTHO05D004318 3.6e-09 67.4 102 34.3
CBR_g27773 Chara braunii HOM05D003675 ORTHO05D004318 1.2e-07 62.4 57 49.1
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 2.0e-07 61.6 207 30.0
PGSC0003DMG400003173 Solanum tuberosum HOM05D003675 ORTHO05D004318 5.8e-07 60.1 83 32.5
HPP92_010708 Vanilla planifolia HOM05D003675 ORTHO05D004318 5.8e-07 60.1 83 31.3


User provided reference genes

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