Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 5.8e-275 950.3 480 100.0
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.4e-105 385.2 450 45.1
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 7.4e-105 385.2 444 46.4
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.2e-104 383.6 450 44.9
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 3.7e-104 382.9 451 44.8
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 8.2e-104 381.7 407 47.7
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 2.4e-103 380.2 450 45.1
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 4.1e-103 379.4 450 44.4
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 5.3e-103 379.0 450 44.4
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 6.9e-103 378.6 452 45.1
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 6.9e-103 378.6 450 44.4
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-102 377.9 450 44.4
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 1.2e-102 377.9 450 44.4
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.2e-102 377.9 450 44.4
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.2e-102 377.9 423 46.1
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.5e-102 377.5 450 44.4
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.5e-102 377.5 446 44.8
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.0e-102 377.1 439 46.5
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 2.0e-102 377.1 450 44.4
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 2.0e-102 377.1 450 44.4
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.6e-102 376.7 432 46.3
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 4.5e-102 375.9 450 44.2
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 7.7e-102 375.2 411 47.9
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.2e-101 373.6 412 46.4
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.2e-101 373.6 420 46.2
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 2.9e-101 373.2 376 48.9
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 2.9e-101 373.2 393 48.1
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 2.9e-101 373.2 424 46.5
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 3.8e-101 372.9 399 47.4
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 3.8e-101 372.9 409 48.2
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.8e-101 372.9 391 47.8
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 3.8e-101 372.9 397 48.4
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.0e-101 372.5 445 44.3
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 5.0e-101 372.5 424 46.2
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 6.5e-101 372.1 451 44.3
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 6.5e-101 372.1 382 48.2
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 8.5e-101 371.7 376 49.2
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.1e-100 371.3 450 44.4
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.4e-100 370.9 375 47.2
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.4e-100 370.9 422 45.3
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.9e-100 370.5 456 43.6
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.9e-100 370.5 428 46.7
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.5e-100 370.2 455 43.7
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 2.5e-100 370.2 430 46.3
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.2e-100 369.8 388 48.7
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 3.2e-100 369.8 397 48.1
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 4.2e-100 369.4 452 44.2
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 5.5e-100 369.0 455 43.5
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 5.5e-100 369.0 469 43.1
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 9.4e-100 368.2 454 43.2
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.2e-99 367.9 437 43.9
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.2e-99 367.9 445 44.7
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 1.2e-99 367.9 435 44.1
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.2e-99 367.9 405 46.9
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.6e-99 367.5 452 43.4
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 1.6e-99 367.5 411 47.0
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 1.6e-99 367.5 384 46.6
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 2.1e-99 367.1 416 46.2
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.1e-99 367.1 413 46.0
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 2.1e-99 367.1 437 44.6
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.1e-99 367.1 449 45.0
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.7e-99 366.7 455 43.1
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.6e-99 366.3 438 44.5
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 3.6e-99 366.3 452 43.4
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 3.6e-99 366.3 452 44.2
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 3.6e-99 366.3 381 48.3
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 4.7e-99 365.9 417 45.1
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 4.7e-99 365.9 408 46.8
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 6.1e-99 365.5 452 43.6
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 6.1e-99 365.5 428 43.7
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 7.9e-99 365.2 390 47.4
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 7.9e-99 365.2 474 42.2
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 7.9e-99 365.2 401 44.6
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.0e-98 364.8 456 42.8
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.0e-98 364.8 410 46.1
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.4e-98 364.4 438 44.1
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.3e-98 363.6 389 47.0
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.9e-98 362.8 376 47.9
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 5.1e-98 362.5 447 44.3
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 6.7e-98 362.1 393 48.6
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.7e-98 362.1 376 47.9
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.7e-98 362.1 376 47.9
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.7e-98 362.1 376 47.9
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 6.7e-98 362.1 425 45.6
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 6.7e-98 362.1 438 44.3
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 8.8e-98 361.7 376 47.6
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 8.8e-98 361.7 387 47.0
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 8.8e-98 361.7 390 47.2
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.1e-97 361.3 372 47.8
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.1e-97 361.3 377 48.0
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.5e-97 360.9 458 43.7
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.0e-97 360.5 429 44.5
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 2.0e-97 360.5 410 45.1
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.6e-97 360.1 450 42.7
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.6e-97 360.1 476 42.9
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.6e-97 360.1 413 44.6
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.4e-97 359.4 476 42.6
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.7e-97 359.0 453 43.5
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.7e-97 359.0 422 44.1
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.7e-97 359.0 466 43.1
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.7e-97 359.0 466 43.1
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 5.7e-97 359.0 462 43.5
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.7e-97 358.2 440 43.4
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 9.7e-97 358.2 440 43.4
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 9.7e-97 358.2 450 43.1
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 9.7e-97 358.2 408 43.6
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.3e-96 357.8 456 42.1
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.3e-96 357.8 381 47.0
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.7e-96 357.5 453 43.0
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.7e-96 357.5 393 47.1
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 2.8e-96 356.7 454 43.4
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.8e-96 356.7 454 42.7
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 3.7e-96 356.3 401 46.1
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 6.3e-96 355.5 438 43.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 8.2e-96 355.1 458 42.8
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 8.2e-96 355.1 461 42.7
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.1e-95 354.8 456 42.5
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.8e-95 354.0 450 42.7
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 9.1e-95 351.7 377 47.7
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 5.9e-94 349.0 362 48.1
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 7.7e-94 348.6 413 45.5
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.2e-93 347.1 437 44.4
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 6.5e-93 345.5 460 41.7
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 2.5e-92 343.6 338 49.1
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 4.7e-91 339.3 413 43.6
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.1e-91 339.0 398 44.2
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 4.0e-90 336.3 410 44.6
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 3.1e-87 326.6 344 48.8
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 4.1e-87 326.2 459 41.0
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 2.0e-86 323.9 506 38.1
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.9e-84 317.4 430 40.2
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 9.4e-84 315.1 410 42.0
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 8.8e-82 308.5 402 42.8
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.1e-79 301.6 474 37.1
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 5.2e-74 282.7 403 40.0
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.1e-71 275.0 301 48.8
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 3.5e-70 270.0 642 30.7
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.5e-68 264.6 427 35.6
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.7e-67 259.6 444 37.4
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 3.6e-59 233.4 387 35.7
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.8e-58 231.1 429 34.3
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 2.6e-57 227.3 382 36.4
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 8.6e-53 212.2 393 31.6
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 5.8e-49 199.5 305 37.4
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 8.1e-35 152.5 161 46.6
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.5e-33 148.3 103 68.9
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.1e-22 111.3 231 32.5
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.2e-14 85.5 72 54.2
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.8e-13 81.6 121 33.9
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.9e-12 78.2 94 46.8
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 6.9e-10 69.7 50 60.0


User provided reference genes

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