Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 1.1e-309 1065.8 544 100.0
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 3.0e-126 456.4 560 45.2
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 6.6e-126 455.3 561 45.1
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 8.6e-126 454.9 564 44.3
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 1.1e-125 454.5 559 44.0
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 1.5e-125 454.1 560 45.0
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 1.9e-125 453.8 561 45.1
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 3.3e-125 453.0 561 45.3
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 7.3e-125 451.8 560 44.1
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 7.3e-125 451.8 561 45.3
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 1.2e-124 451.1 561 45.1
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 1.2e-124 451.1 561 45.1
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 1.6e-124 450.7 561 44.6
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 1.6e-124 450.7 561 45.1
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 3.6e-124 449.5 564 44.7
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 1.1e-123 448.0 573 43.1
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 1.1e-123 448.0 561 44.7
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 1.1e-123 448.0 559 44.4
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 1.8e-123 447.2 564 44.3
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 1.8e-123 447.2 564 44.3
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 2.4e-123 446.8 559 44.0
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 3.1e-123 446.4 573 43.1
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 5.2e-123 445.7 573 42.9
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 6.8e-123 445.3 573 42.8
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 1.5e-122 444.1 561 43.3
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 1.5e-122 444.1 563 44.0
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 2.0e-122 443.7 561 44.2
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 2.6e-122 443.4 562 44.1
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.4e-122 443.0 561 43.9
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 3.4e-122 443.0 562 43.8
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 4.4e-122 442.6 560 43.0
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 9.9e-122 441.4 588 43.5
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 1.3e-121 441.0 562 44.1
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 1.3e-121 441.0 561 44.0
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 1.3e-121 441.0 529 46.7
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 2.2e-121 440.3 561 43.7
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 3.8e-121 439.5 568 44.4
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 4.9e-121 439.1 561 44.0
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.4e-120 437.6 569 43.2
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.4e-120 437.6 563 43.5
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 2.4e-120 436.8 563 43.5
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 4.2e-120 436.0 563 43.5
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 5.4e-120 435.6 561 43.5
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 9.3e-120 434.9 584 43.3
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 9.3e-120 434.9 560 43.8
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 1.2e-119 434.5 597 42.4
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 1.2e-119 434.5 564 43.6
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 1.6e-119 434.1 556 43.5
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.7e-119 433.3 556 43.7
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 7.8e-119 431.8 563 43.5
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 7.8e-119 431.8 569 43.6
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 2.3e-118 430.3 560 43.8
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 3.9e-118 429.5 561 43.0
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 1.9e-117 427.2 564 43.4
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.5e-117 426.8 522 44.8
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 2.5e-117 426.8 569 42.9
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 7.3e-117 425.2 562 42.5
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 7.3e-117 425.2 560 44.1
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 2.1e-116 423.7 570 42.5
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 1.4e-115 421.0 542 45.0
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 2.4e-115 420.2 562 43.1
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.1e-115 419.9 626 40.9
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 9.0e-115 418.3 561 42.8
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 4.4e-114 416.0 570 42.1
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 5.8e-114 415.6 560 42.7
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 9.9e-114 414.8 561 42.2
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 2.2e-113 413.7 558 42.3
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 2.9e-113 413.3 527 43.1
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 3.8e-113 412.9 560 42.1
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 3.8e-113 412.9 594 41.9
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.4e-112 411.0 562 41.6
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 2.4e-112 410.2 558 42.7
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 4.2e-112 409.5 571 42.9
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 9.3e-112 408.3 583 41.2
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 9.3e-112 408.3 574 42.2
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 9.3e-112 408.3 559 41.7
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 3.5e-111 406.4 486 45.3
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 4.6e-111 406.0 560 41.6
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 7.8e-111 405.2 530 43.4
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 1.7e-110 404.1 561 41.0
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 8.7e-110 401.7 564 40.8
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 1.1e-109 401.4 475 46.1
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 4.3e-109 399.4 568 42.1
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 4.3e-109 399.4 580 42.1
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 4.8e-108 396.0 559 40.6
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 5.3e-107 392.5 564 41.5
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 5.8e-106 389.0 558 41.2
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 6.4e-105 385.6 567 40.2
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 1.9e-104 384.0 650 36.9
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 6.0e-103 379.0 456 44.7
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 9.0e-99 365.2 456 45.2
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 1.9e-93 347.4 525 38.7
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 3.1e-91 340.1 455 41.1
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 5.0e-89 332.8 455 41.8
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 1.5e-82 311.2 520 36.7
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 7.2e-80 302.4 562 35.2
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.1e-75 288.5 603 34.7
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 1.0e-73 282.0 420 39.0
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 3.2e-72 276.9 581 33.7
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 2.1e-71 274.2 458 36.5
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 2.7e-71 273.9 392 39.5
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 6.1e-71 272.7 449 37.6
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 1.8e-70 271.2 362 43.1
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 3.0e-62 243.8 265 47.9
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.1e-59 235.3 231 50.6
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.6e-58 231.5 301 43.5
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 7.7e-58 229.2 335 40.9
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.5e-56 224.9 538 30.7
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 6.8e-54 216.1 309 42.4
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 9.1e-51 205.7 542 32.7
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 1.3e-49 201.8 553 32.0
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.5e-45 188.3 242 42.6
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 3.0e-38 164.1 142 57.0
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 2.6e-37 161.0 580 29.5
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 7.8e-34 149.4 185 44.3
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.7e-33 148.3 233 38.2
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 4.0e-30 137.1 126 54.8
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.3e-28 132.1 128 54.7
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 4.9e-28 130.2 129 49.6
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.1e-27 127.1 159 42.1
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 5.6e-24 116.7 174 41.4
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 7.5e-21 106.3 88 53.4
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 5.6e-16 90.1 107 45.8
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 4.0e-14 84.0 492 22.2
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 3.2e-11 74.3 517 22.8
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 1.6e-10 72.0 533 22.7
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 2.7e-10 71.2 73 50.7
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 6.0e-10 70.1 55 56.4
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 5.6e-08 63.5 495 23.4
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 6.8e-06 56.6 50 50.0


User provided reference genes

Program Settings