Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26981 Corylus avellana HOM05D003281 ORTHO05D004128 0.0e+00 1075.1 560 100.0
Pp3s32_111 Physcomitrium patens HOM05D003281 ORTHO05D004128 3.4e-125 453.0 527 49.9
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 3.3e-120 436.4 543 48.4
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 4.3e-120 436.0 547 47.9
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 5.8e-117 425.6 572 46.3
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 4.1e-115 419.5 544 46.3
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 1.2e-114 417.9 541 45.5
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 1.3e-113 414.5 544 46.5
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 4.3e-112 409.5 542 45.2
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 9.5e-112 408.3 544 45.4
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 9.5e-112 408.3 570 43.5
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 3.6e-111 406.4 545 45.3
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 4.7e-111 406.0 540 45.6
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 6.2e-111 405.6 556 44.1
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 1.1e-110 404.8 540 45.4
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 1.8e-110 404.1 537 45.3
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 1.8e-110 404.1 541 45.5
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.4e-110 403.7 540 44.4
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 3.1e-110 403.3 545 44.4
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 3.1e-110 403.3 545 44.4
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 3.1e-110 403.3 556 44.1
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 5.2e-110 402.5 541 44.5
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 6.8e-110 402.1 541 45.1
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.2e-109 401.4 542 45.0
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 1.5e-109 401.0 579 43.2
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 1.5e-109 401.0 542 45.8
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 1.5e-109 401.0 567 44.1
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 1.5e-109 401.0 541 43.8
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 2.6e-109 400.2 556 44.6
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 3.4e-109 399.8 557 43.6
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 3.4e-109 399.8 554 44.4
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 4.4e-109 399.4 541 44.7
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 4.4e-109 399.4 542 45.0
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 4.4e-109 399.4 542 45.2
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 5.8e-109 399.1 541 44.5
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 7.6e-109 398.7 542 45.2
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 9.9e-109 398.3 541 44.9
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 9.9e-109 398.3 541 44.5
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 9.9e-109 398.3 559 44.9
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 9.9e-109 398.3 539 45.6
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 1.7e-108 397.5 542 44.6
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 1.7e-108 397.5 542 43.7
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.7e-108 397.5 542 44.8
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.7e-108 397.5 554 44.0
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 1.7e-108 397.5 548 44.2
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 2.2e-108 397.1 556 44.2
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 2.9e-108 396.7 541 44.2
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 3.8e-108 396.4 541 44.2
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 4.9e-108 396.0 541 44.9
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 4.9e-108 396.0 541 44.4
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 6.4e-108 395.6 541 44.2
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 6.4e-108 395.6 543 43.5
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 6.4e-108 395.6 541 44.5
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 8.4e-108 395.2 577 43.3
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 8.4e-108 395.2 541 44.5
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 8.4e-108 395.2 566 43.1
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 8.4e-108 395.2 559 44.4
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 8.4e-108 395.2 542 43.7
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 1.1e-107 394.8 541 44.5
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.1e-107 394.8 539 43.4
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 1.1e-107 394.8 541 44.7
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 1.1e-107 394.8 542 43.5
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 1.1e-107 394.8 542 44.8
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 1.4e-107 394.4 570 42.6
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 1.4e-107 394.4 540 43.7
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 1.4e-107 394.4 545 43.7
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 1.9e-107 394.0 542 43.5
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.9e-107 394.0 564 43.6
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 1.9e-107 394.0 542 43.5
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 1.9e-107 394.0 542 44.6
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 2.4e-107 393.7 541 44.4
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.4e-107 393.7 541 44.5
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 4.1e-107 392.9 555 43.8
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 4.1e-107 392.9 541 44.5
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 5.4e-107 392.5 541 44.2
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 5.4e-107 392.5 542 44.5
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 7.1e-107 392.1 542 44.6
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 7.1e-107 392.1 540 44.8
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 7.1e-107 392.1 542 43.5
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.2e-106 391.3 541 44.2
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.6e-106 391.0 544 44.5
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 1.6e-106 391.0 542 44.5
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 1.6e-106 391.0 540 43.3
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.6e-106 391.0 543 44.4
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 1.6e-106 391.0 540 44.4
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 1.6e-106 391.0 542 44.8
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 2.1e-106 390.6 560 44.5
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 2.1e-106 390.6 542 44.5
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 3.5e-106 389.8 542 44.1
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 4.6e-106 389.4 541 44.0
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 4.6e-106 389.4 573 43.3
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 4.6e-106 389.4 546 44.3
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 1.7e-105 387.5 542 44.1
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 3.0e-105 386.7 583 41.9
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 3.9e-105 386.3 556 43.2
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 3.9e-105 386.3 559 43.1
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 5.1e-105 386.0 541 44.4
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 6.6e-105 385.6 545 43.5
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 6.6e-105 385.6 557 42.9
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 8.7e-105 385.2 560 42.9
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 1.9e-104 384.0 582 41.1
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 3.3e-104 383.3 562 43.1
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 3.3e-104 383.3 538 43.5
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 4.7e-103 379.4 558 42.7
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 4.7e-103 379.4 547 43.7
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 9.0e-102 375.2 516 44.2
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 1.4e-99 367.9 520 42.9
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.2e-98 364.8 554 42.1
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.6e-98 364.4 575 41.2
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 6.0e-98 362.5 522 43.5
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.3e-97 360.5 526 43.3
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.0e-97 360.1 545 42.2
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 5.1e-97 359.4 540 41.5
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.5e-96 357.8 522 43.5
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 2.5e-96 357.1 540 41.5
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 9.6e-96 355.1 485 45.4
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 9.6e-96 355.1 516 43.0
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.3e-95 354.8 531 42.7
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 2.8e-95 353.6 542 41.7
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 2.4e-94 350.5 517 43.1
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 1.2e-93 348.2 487 43.7
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-87 328.2 528 40.9
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 3.7e-87 326.6 461 43.6
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 3.1e-86 323.6 450 44.7
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.4e-85 320.1 676 34.6
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 9.9e-85 318.5 539 39.1
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.7e-84 317.8 594 37.9
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 2.2e-84 317.4 439 43.7
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-81 308.1 563 37.8
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 1.3e-81 308.1 557 38.2
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.9e-80 304.3 595 36.6
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 9.6e-80 302.0 449 43.4
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.8e-79 300.4 515 38.6
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.5e-77 294.7 573 37.0
HPP92_009463 Vanilla planifolia HOM05D003281 ORTHO05D004128 2.0e-69 267.7 323 47.7
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 1.7e-68 264.6 420 41.7
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.0e-65 255.4 503 38.2
FAN06G1854 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.0e-61 241.1 378 41.5
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 1.1e-59 235.3 537 33.3
unitig_48.g30290 Utricularia gibba HOM05D003281 ORTHO05D004128 6.7e-57 226.1 304 47.0
unitig_46.g18375 Utricularia gibba HOM05D003281 ORTHO05D004128 1.3e-55 221.9 262 49.6
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 2.6e-53 214.2 472 35.6
Haze_06128 Corylus avellana HOM05D003281 ORTHO05D004128 3.0e-49 200.7 252 47.2
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 5.0e-44 183.3 304 40.5
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 7.2e-43 179.5 293 38.9
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.7e-42 177.6 340 36.2
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 8.3e-31 139.4 205 40.0
Cpa.g.c33226 Carica papaya HOM05D003281 ORTHO05D004128 1.8e-30 138.3 135 53.3
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 5.5e-27 126.7 197 38.6
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.5e-27 126.7 197 38.6
Cfa000680 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.5e-24 118.6 180 37.8
unitig_46.g18364 Utricularia gibba HOM05D003281 ORTHO05D004128 1.8e-22 111.7 208 38.9
A04p28850 Brassica napus HOM05D003281 ORTHO05D004128 4.5e-21 107.1 132 46.2
BraA09t41745Z Brassica rapa HOM05D003281 ORTHO05D004128 4.5e-21 107.1 132 46.2
vmacro14666 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 2.1e-18 98.2 90 51.1
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 5.2e-17 93.6 81 58.0
BraA04t16730Z Brassica rapa HOM05D003281 ORTHO05D004128 7.5e-16 89.7 140 38.6
BraA08t33338Z Brassica rapa HOM05D003281 ORTHO05D004128 7.5e-16 89.7 140 38.6
TPR.G29009 Trifolium pratense HOM05D003281 ORTHO05D004128 1.3e-15 89.0 79 57.0
HPP92_009464 Vanilla planifolia HOM05D003281 ORTHO05D004128 2.9e-15 87.8 191 33.5
MD12G1088900 Malus domestica HOM05D003281 ORTHO05D004128 4.9e-15 87.0 145 40.7
Duzib248G0655 Durio zibethinus HOM05D003281 ORTHO05D004128 1.4e-14 85.5 90 43.3
MBI14_g40671_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 5.4e-14 83.6 79 53.2
SHI29162 Sapria himalayana HOM05D003281 ORTHO05D004128 3.5e-13 80.9 64 56.2
Rhsim05G0149200 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.0e-12 79.3 128 38.3
Rhsim01G0111700 Rhododendron simsii HOM05D003281 ORTHO05D004128 3.9e-12 77.4 128 39.1
MD12G1088800 Malus domestica HOM05D003281 ORTHO05D004128 2.1e-10 71.6 96 39.6
unitig_46.g18256 Utricularia gibba HOM05D003281 ORTHO05D004128 1.4e-09 68.9 103 39.8
Eucgr.L01257 Eucalyptus grandis HOM05D003281 ORTHO05D004128 5.2e-09 67.0 150 34.0
BcaB06g29137 Brassica carinata HOM05D003281 ORTHO05D014492 1.2e-08 65.9 95 36.8
SalBow3G3901 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.5e-08 65.5 130 36.2
C09p51540 Brassica napus HOM05D003281 ORTHO05D004128 2.0e-08 65.1 99 47.5
BolC9t58011H Brassica oleracea HOM05D003281 ORTHO05D004128 4.4e-08 63.9 96 47.9
BcaC03g16612 Brassica carinata HOM05D012485 ORTHO05D020051 1.7e-07 62.0 103 36.9
C02p44410 Brassica napus HOM05D012485 ORTHO05D020051 1.7e-07 62.0 103 36.9
C09p67310 Brassica napus HOM05D012485 ORTHO05D020051 1.7e-07 62.0 103 36.9
BraA08t32277Z Brassica rapa HOM05D003281 ORTHO05D020051 1.7e-07 62.0 103 36.9
BcaB05g22512 Brassica carinata HOM05D003281 ORTHO05D020051 6.4e-07 60.1 102 37.3
BolC2t10487H Brassica oleracea HOM05D003281 ORTHO05D020051 1.9e-06 58.5 103 37.9


User provided reference genes

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