Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 2.3e-173 612.1 301 100.0
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 4.6e-60 235.7 291 46.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.7e-59 233.8 291 45.7
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 6.6e-59 231.9 292 44.9
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 2.5e-58 229.9 291 45.0
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 3.3e-58 229.6 291 45.0
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 4.3e-58 229.2 291 44.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 7.3e-58 228.4 292 44.5
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.3e-58 228.4 291 44.0
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 7.3e-58 228.4 291 44.0
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.6e-57 227.3 291 44.7
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.6e-57 227.3 291 44.3
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.6e-57 227.3 291 44.0
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.6e-57 227.3 291 44.7
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.6e-57 227.3 294 43.9
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.1e-57 226.9 291 44.3
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.1e-57 226.9 291 44.7
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.1e-57 226.9 291 44.3
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 2.8e-57 226.5 291 43.0
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.8e-57 226.5 290 43.8
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 2.8e-57 226.5 292 44.5
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 3.6e-57 226.1 292 44.2
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.6e-57 226.1 291 43.6
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 4.7e-57 225.7 291 44.3
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 4.7e-57 225.7 292 44.2
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 4.7e-57 225.7 292 44.9
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 4.7e-57 225.7 291 44.0
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 6.2e-57 225.3 291 44.0
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 6.2e-57 225.3 291 44.3
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 8.0e-57 224.9 291 44.3
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-56 224.6 292 44.2
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.1e-56 224.6 291 43.3
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.1e-56 224.6 291 43.0
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.1e-56 224.6 291 44.0
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.4e-56 224.2 292 44.2
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.4e-56 224.2 293 44.4
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.4e-56 224.2 291 43.6
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.4e-56 224.2 294 43.9
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.4e-56 224.2 291 44.3
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.4e-56 224.2 291 43.3
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.8e-56 223.8 291 43.3
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 2.3e-56 223.4 291 42.6
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 2.3e-56 223.4 291 43.0
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.3e-56 223.4 291 43.6
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 2.3e-56 223.4 291 44.0
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 2.3e-56 223.4 292 43.2
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.1e-56 223.0 291 43.6
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 4.0e-56 222.6 292 43.2
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.0e-56 222.6 291 43.3
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 5.2e-56 222.2 291 43.6
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 5.2e-56 222.2 292 43.8
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 5.2e-56 222.2 291 43.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 6.8e-56 221.9 291 42.6
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 6.8e-56 221.9 291 43.6
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 8.9e-56 221.5 291 44.3
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 8.9e-56 221.5 291 41.9
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 8.9e-56 221.5 292 42.5
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 8.9e-56 221.5 291 43.6
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 8.9e-56 221.5 291 44.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.2e-55 221.1 292 43.2
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.5e-55 220.7 292 43.8
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.5e-55 220.7 291 42.6
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.5e-55 220.7 291 43.0
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.5e-55 220.7 291 43.3
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.5e-55 220.7 292 43.5
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.5e-55 220.7 292 43.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.0e-55 220.3 291 43.3
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 2.0e-55 220.3 292 43.2
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.6e-55 219.9 291 43.3
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 2.6e-55 219.9 291 42.6
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.6e-55 219.9 291 42.6
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.4e-55 219.5 291 42.3
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 3.4e-55 219.5 291 42.6
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 3.4e-55 219.5 292 43.8
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.4e-55 219.5 291 41.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.4e-55 219.2 291 42.3
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.4e-55 219.2 292 43.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 4.4e-55 219.2 292 43.2
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 5.8e-55 218.8 291 41.9
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 5.8e-55 218.8 292 43.8
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.8e-55 218.8 295 43.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 7.5e-55 218.4 291 42.3
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.5e-55 218.4 292 43.5
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 9.8e-55 218.0 291 41.9
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 9.8e-55 218.0 292 42.1
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-54 217.6 291 41.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.3e-54 217.6 291 41.9
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.3e-54 217.6 291 43.0
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.3e-54 217.6 291 42.6
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.3e-54 217.6 291 43.0
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.7e-54 217.2 291 41.9
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.7e-54 217.2 291 41.9
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.7e-54 217.2 291 41.9
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 2.2e-54 216.9 291 41.9
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 2.9e-54 216.5 305 41.6
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 2.9e-54 216.5 291 43.0
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 2.9e-54 216.5 291 44.0
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 3.7e-54 216.1 291 42.3
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 3.7e-54 216.1 291 43.0
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 6.4e-54 215.3 291 41.6
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 6.4e-54 215.3 291 42.6
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 6.4e-54 215.3 281 42.7
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 8.3e-54 214.9 291 41.2
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.1e-53 214.5 294 42.5
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.9e-53 213.8 291 41.6
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 3.2e-53 213.0 292 41.8
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 4.1e-53 212.6 302 41.4
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.2e-53 211.5 291 41.2
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.6e-52 210.7 291 40.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 6.0e-52 208.8 279 42.3
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 6.6e-51 205.3 299 42.8
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.5e-50 204.1 348 37.6
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.5e-50 203.4 295 43.1
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.4e-48 197.6 280 40.7
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.1e-48 196.4 228 47.4
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.5e-47 191.8 255 43.1
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 3.7e-46 189.5 302 39.1
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.6e-44 184.1 261 41.0
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.5e-44 183.0 284 39.8
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.5e-42 177.6 291 38.1
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 9.5e-42 174.9 234 43.6
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 8.4e-38 161.8 295 37.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.4e-37 161.0 239 39.3
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 9.2e-37 158.3 194 45.9
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.7e-36 156.8 291 37.1
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 6.0e-36 155.6 288 35.4
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 8.7e-35 151.8 290 36.2
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 3.6e-33 146.4 288 31.6
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 8.1e-33 145.2 194 44.8
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.3e-32 142.5 191 44.0
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.2e-28 131.3 197 39.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 4.6e-28 129.4 210 37.6
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.3e-26 123.2 242 36.0
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 8.1e-25 118.6 176 41.5
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 9.0e-24 115.2 192 38.5
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 9.0e-24 115.2 166 41.6
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 2.6e-23 113.6 191 40.3
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.5e-23 112.8 283 32.5
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.5e-20 103.2 140 42.9
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.6e-20 102.8 199 37.7
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 1.0e-19 101.7 108 47.2
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.4e-16 90.5 108 46.3
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.5e-13 80.5 84 48.8
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 3.2e-13 80.1 100 40.0
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 4.6e-12 76.3 108 40.7
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 5.3e-08 62.8 101 37.6
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 3.4e-07 60.1 118 40.7


User provided reference genes

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