Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 5.7e-115 417.5 203 100.0
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 3.6e-16 89.4 103 41.7
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 4.6e-16 89.0 125 39.2
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 6.1e-16 88.6 125 42.4
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 7.9e-16 88.2 105 43.8
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.4e-15 87.4 121 40.5
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.4e-15 87.4 87 50.6
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.8e-15 87.0 150 36.7
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.8e-15 87.0 119 39.5
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.8e-15 87.0 115 42.6
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 2.3e-15 86.7 127 41.7
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 3.0e-15 86.3 122 41.0
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.0e-15 86.3 97 44.3
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 3.9e-15 85.9 121 38.8
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 5.1e-15 85.5 87 49.4
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 5.1e-15 85.5 142 40.1
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 6.7e-15 85.1 86 46.5
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 6.7e-15 85.1 87 47.1
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 8.8e-15 84.7 86 46.5
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 8.8e-15 84.7 86 46.5
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 8.8e-15 84.7 86 46.5
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.1e-14 84.3 87 48.3
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.1e-14 84.3 121 39.7
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.1e-14 84.3 110 40.9
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 1.1e-14 84.3 87 47.1
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.1e-14 84.3 87 48.3
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 1.5e-14 84.0 87 48.3
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.0e-14 83.6 97 43.3
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 2.0e-14 83.6 124 37.9
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 2.0e-14 83.6 87 47.1
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 2.0e-14 83.6 87 47.1
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.0e-14 83.6 87 46.0
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 2.0e-14 83.6 104 40.4
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 2.5e-14 83.2 121 40.5
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 2.5e-14 83.2 108 41.7
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.5e-14 83.2 124 40.3
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 2.5e-14 83.2 86 45.3
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 2.5e-14 83.2 108 41.7
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 2.5e-14 83.2 105 41.0
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 3.3e-14 82.8 91 45.1
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 3.3e-14 82.8 122 41.0
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 3.3e-14 82.8 125 38.4
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 3.3e-14 82.8 121 38.8
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 3.3e-14 82.8 125 38.4
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 3.3e-14 82.8 125 38.4
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 3.3e-14 82.8 121 38.8
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 3.3e-14 82.8 105 41.9
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 3.3e-14 82.8 112 41.1
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 3.3e-14 82.8 97 45.4
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 3.3e-14 82.8 86 45.3
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 4.3e-14 82.4 87 46.0
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 4.3e-14 82.4 86 46.5
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 4.3e-14 82.4 87 46.0
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 4.3e-14 82.4 122 41.0
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 4.3e-14 82.4 142 35.9
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.3e-14 82.4 111 42.3
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 4.3e-14 82.4 111 42.3
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 5.7e-14 82.0 87 46.0
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 5.7e-14 82.0 120 39.2
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 5.7e-14 82.0 110 40.9
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.7e-14 82.0 112 41.1
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 5.7e-14 82.0 97 43.3
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 5.7e-14 82.0 104 42.3
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 5.7e-14 82.0 104 39.4
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 5.7e-14 82.0 87 46.0
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 7.4e-14 81.6 109 41.3
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 7.4e-14 81.6 110 40.0
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 7.4e-14 81.6 87 46.0
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 7.4e-14 81.6 121 39.7
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 9.7e-14 81.3 87 46.0
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 9.7e-14 81.3 90 45.6
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 9.7e-14 81.3 119 38.7
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 9.7e-14 81.3 94 44.7
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 9.7e-14 81.3 87 44.8
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 9.7e-14 81.3 87 46.0
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 9.7e-14 81.3 105 42.9
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.3e-13 80.9 87 46.0
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.3e-13 80.9 127 40.2
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.3e-13 80.9 87 46.0
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.7e-13 80.5 121 39.7
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.7e-13 80.5 122 40.2
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.7e-13 80.5 119 39.5
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.2e-13 80.1 87 43.7
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.2e-13 80.1 86 45.3
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 2.8e-13 79.7 87 46.0
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 2.8e-13 79.7 111 37.8
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 2.8e-13 79.7 111 37.8
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 2.8e-13 79.7 87 43.7
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 2.8e-13 79.7 102 42.2
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.7e-13 79.3 87 44.8
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 3.7e-13 79.3 87 44.8
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 3.7e-13 79.3 104 41.3
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 4.8e-13 79.0 87 43.7
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 4.8e-13 79.0 100 41.0
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 4.8e-13 79.0 86 44.2
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 6.3e-13 78.6 86 45.3
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 6.3e-13 78.6 87 44.8
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 6.3e-13 78.6 87 44.8
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 6.3e-13 78.6 87 44.8
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 6.3e-13 78.6 87 44.8
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 6.3e-13 78.6 87 44.8
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 8.2e-13 78.2 87 43.7
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.1e-12 77.8 121 38.0
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.1e-12 77.8 106 38.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.4e-12 77.4 101 41.6
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 1.4e-12 77.4 68 52.9
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.4e-12 77.4 104 36.5
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.4e-12 77.4 100 39.0
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.4e-12 77.4 104 36.5
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 1.8e-12 77.0 87 43.7
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.4e-12 76.6 103 35.9
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 2.4e-12 76.6 75 50.7
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 4.1e-12 75.9 112 38.4
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 5.3e-12 75.5 113 37.2
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 5.3e-12 75.5 87 42.5
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 9.1e-12 74.7 87 42.5
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 9.1e-12 74.7 98 39.8
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 9.1e-12 74.7 68 51.5
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 9.1e-12 74.7 68 51.5
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.6e-11 73.2 90 42.2
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 2.6e-11 73.2 80 46.2
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 2.6e-11 73.2 67 50.7
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 4.5e-11 72.4 87 41.4
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.9e-11 72.0 100 37.0
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 5.9e-11 72.0 97 38.1
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 1.0e-10 71.2 84 41.7
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 1.0e-10 71.2 87 43.7
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.7e-10 70.5 67 47.8
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.2e-10 70.1 67 47.8
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 6.5e-10 68.6 68 50.0
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.1e-09 67.8 79 43.0
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 4.2e-09 65.9 105 35.2
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 4.2e-09 65.9 68 44.1
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 9.4e-09 64.7 73 45.2
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 9.4e-09 64.7 90 42.2
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 3.6e-08 62.8 54 51.9
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 6.1e-08 62.0 68 45.6
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 2.6e-06 56.6 73 38.4


User provided reference genes

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