Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.3e-105 385.6 192 100.0
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 9.0e-70 267.3 188 70.2
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.0e-69 266.2 188 70.2
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.6e-69 265.8 188 69.7
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.5e-69 265.0 188 68.6
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 4.5e-69 265.0 188 67.6
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 4.5e-69 265.0 191 64.9
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 5.8e-69 264.6 188 69.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 5.8e-69 264.6 188 69.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 5.8e-69 264.6 188 69.1
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 7.6e-69 264.2 188 68.6
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.3e-68 263.5 187 69.5
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.2e-68 262.7 188 68.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 2.2e-68 262.7 188 68.6
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 2.9e-68 262.3 188 67.6
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.9e-68 262.3 187 69.0
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 3.8e-68 261.9 188 66.5
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 3.8e-68 261.9 188 66.5
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 4.9e-68 261.5 188 67.6
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.9e-68 261.5 188 66.5
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 6.5e-68 261.2 188 65.4
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 6.5e-68 261.2 190 66.3
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 6.5e-68 261.2 188 67.0
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 6.5e-68 261.2 188 68.1
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 8.4e-68 260.8 188 67.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 8.4e-68 260.8 188 66.0
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.1e-67 260.4 188 68.1
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.1e-67 260.4 188 68.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.4e-67 260.0 188 67.0
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.4e-67 260.0 188 67.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-67 260.0 188 65.4
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.4e-67 260.0 188 65.4
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.4e-67 260.0 188 68.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.4e-67 260.0 188 67.6
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.4e-67 260.0 188 68.1
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.9e-67 259.6 188 65.4
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.9e-67 259.6 188 65.4
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.9e-67 259.6 188 67.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.9e-67 259.6 188 67.6
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.9e-67 259.6 188 67.6
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.9e-67 259.6 188 65.4
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 66.5
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 67.0
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 64.9
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 65.4
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 64.9
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 67.0
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 68.1
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 2.5e-67 259.2 188 67.6
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 3.2e-67 258.8 188 67.6
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 3.2e-67 258.8 193 66.8
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 4.2e-67 258.5 188 67.6
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 4.2e-67 258.5 188 66.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 4.2e-67 258.5 188 66.5
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 4.2e-67 258.5 188 67.6
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 5.5e-67 258.1 188 67.0
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 5.5e-67 258.1 188 64.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 5.5e-67 258.1 188 65.4
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 5.5e-67 258.1 188 66.5
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 5.5e-67 258.1 188 67.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 5.5e-67 258.1 188 67.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 7.1e-67 257.7 188 64.9
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 7.1e-67 257.7 188 67.6
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 9.3e-67 257.3 188 67.0
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 9.3e-67 257.3 187 68.4
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.2e-66 256.9 188 67.0
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-66 256.9 188 67.0
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-66 256.9 188 67.0
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.2e-66 256.9 188 65.4
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.2e-66 256.9 188 66.5
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.1e-66 256.1 188 67.6
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.1e-66 256.1 188 66.0
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 2.1e-66 256.1 188 66.5
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.7e-66 255.8 187 66.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 2.7e-66 255.8 188 66.0
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 2.7e-66 255.8 188 66.0
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 3.5e-66 255.4 187 66.8
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 3.5e-66 255.4 188 65.4
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 3.5e-66 255.4 188 66.5
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 4.6e-66 255.0 188 64.9
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 4.6e-66 255.0 188 65.4
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 4.6e-66 255.0 188 66.0
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 4.6e-66 255.0 188 66.0
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 4.6e-66 255.0 188 66.5
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 4.6e-66 255.0 188 66.5
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 4.6e-66 255.0 188 66.5
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.0e-66 254.6 188 66.5
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 7.9e-66 254.2 195 66.7
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.3e-65 253.4 188 66.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.8e-65 253.1 188 66.0
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 2.3e-65 252.7 188 66.0
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 3.0e-65 252.3 200 64.0
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 3.9e-65 251.9 201 64.2
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.7e-65 250.8 188 62.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.1e-64 250.4 184 64.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.1e-64 250.4 186 65.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.5e-64 249.2 188 63.3
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 3.3e-64 248.8 194 64.4
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 5.7e-64 248.1 210 60.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.8e-63 245.7 215 59.1
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 8.2e-63 244.2 188 63.8
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.8e-62 243.0 213 58.2
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.7e-60 236.5 229 54.6
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.5e-56 223.4 170 62.9
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.5e-56 223.4 170 64.7
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.3e-56 222.2 181 62.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.3e-56 222.2 181 62.4
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 4.3e-56 221.9 170 64.1
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 3.1e-54 215.7 167 64.1
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 6.9e-54 214.5 160 66.2
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 2.0e-53 213.0 160 65.0
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 2.2e-52 209.5 162 61.7
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.9e-51 206.5 160 65.0
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 4.8e-47 191.8 170 58.8
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.1e-46 188.7 206 46.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.6e-45 186.0 209 49.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.2e-43 178.7 184 51.1
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.2e-42 177.2 188 49.5
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 8.8e-41 171.0 110 73.6
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.4e-38 162.9 103 73.8
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.6e-37 159.5 110 70.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 5.5e-35 151.8 133 57.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.4e-35 151.0 149 54.4
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 5.7e-32 141.7 130 56.9
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.8e-31 139.4 110 63.6
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 6.3e-31 138.3 110 62.7
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.4e-30 136.3 110 61.8
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-28 130.2 158 42.4
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 5.0e-28 128.6 161 45.3
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.2e-27 125.9 76 75.0
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.2e-27 125.6 79 73.4
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.6e-26 123.6 76 73.7
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 6.1e-26 121.7 76 72.4
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 8.0e-26 121.3 76 73.7
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 4.8e-23 112.1 70 70.0
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 6.3e-23 111.7 67 74.6
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.6e-21 107.1 67 73.1
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 4.5e-21 105.5 67 73.1
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 4.5e-21 105.5 67 73.1
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 4.5e-21 105.5 67 70.1
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 8.0e-18 94.7 82 59.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 1.4e-17 94.0 85 56.5
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 7.8e-13 78.2 88 51.1
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 2.1e-10 70.1 51 62.7
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.1e-10 68.6 38 78.9
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.1e-10 68.6 38 78.9
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.1e-10 68.6 38 78.9
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.1e-10 68.6 38 78.9
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 8.0e-10 68.2 46 67.4
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 1.0e-09 67.8 36 83.3


User provided reference genes

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