Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 6.5e-102 374.0 183 100.0
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 8.9e-59 230.7 177 59.9
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.4e-58 228.8 177 59.9
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.7e-57 226.5 177 58.8
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.7e-57 226.5 177 59.3
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.2e-57 226.1 177 58.8
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 2.2e-57 226.1 177 58.8
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 2.2e-57 226.1 177 58.8
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 2.2e-57 226.1 177 58.8
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.9e-57 225.7 177 58.2
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 2.9e-57 225.7 177 59.3
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.9e-57 225.7 177 59.3
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.9e-57 225.7 183 57.4
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.9e-57 225.7 183 57.4
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 2.9e-57 225.7 183 57.4
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.9e-57 225.7 183 56.8
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.9e-57 225.7 177 58.8
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 3.7e-57 225.3 183 57.4
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.7e-57 225.3 183 55.2
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 4.9e-57 224.9 177 58.2
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 4.9e-57 224.9 177 58.2
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 6.4e-57 224.6 177 58.2
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 6.4e-57 224.6 183 56.8
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 6.4e-57 224.6 177 56.5
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 6.4e-57 224.6 177 58.2
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 6.4e-57 224.6 182 56.6
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 8.3e-57 224.2 177 58.8
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 8.3e-57 224.2 177 60.5
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 8.3e-57 224.2 177 58.8
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 8.3e-57 224.2 177 57.6
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 8.3e-57 224.2 177 57.6
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 8.3e-57 224.2 177 58.8
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 8.3e-57 224.2 177 58.8
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.1e-56 223.8 183 56.8
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.1e-56 223.8 177 59.3
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.1e-56 223.8 177 57.1
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.1e-56 223.8 177 57.6
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.1e-56 223.8 177 57.6
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 1.1e-56 223.8 177 59.3
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.9e-56 223.0 177 57.1
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.9e-56 223.0 177 58.2
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 1.9e-56 223.0 177 58.2
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.9e-56 223.0 177 58.2
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.4e-56 222.6 177 57.1
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.4e-56 222.6 177 58.2
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 2.4e-56 222.6 177 58.2
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 3.2e-56 222.2 177 58.2
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 3.2e-56 222.2 177 57.6
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.2e-56 222.2 177 57.1
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 5.4e-56 221.5 177 57.1
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 5.4e-56 221.5 177 58.2
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 5.4e-56 221.5 177 56.5
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 7.1e-56 221.1 183 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 9.2e-56 220.7 183 54.1
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 9.2e-56 220.7 177 57.1
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 9.2e-56 220.7 176 56.2
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 1.2e-55 220.3 177 55.9
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 2.1e-55 219.5 177 56.5
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 2.7e-55 219.2 177 57.1
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 2.7e-55 219.2 173 57.8
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 3.5e-55 218.8 174 57.5
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 3.5e-55 218.8 177 57.1
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 3.5e-55 218.8 177 55.9
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 4.6e-55 218.4 174 57.5
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.0e-54 217.2 174 56.3
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 1.0e-54 217.2 179 55.3
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.3e-54 216.9 174 57.5
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 1.7e-54 216.5 177 56.5
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 3.0e-54 215.7 173 57.2
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 6.6e-54 214.5 189 54.5
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 6.6e-54 214.5 199 52.3
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.1e-53 213.8 177 54.8
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.5e-53 213.4 173 56.6
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.5e-53 212.6 177 54.8
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.3e-53 212.2 173 56.6
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 5.6e-53 211.5 177 54.8
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 5.6e-53 211.5 177 54.8
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 5.6e-53 211.5 177 54.8
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 9.5e-53 210.7 194 53.6
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.2e-52 210.3 177 54.2
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 3.6e-52 208.8 177 54.8
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 4.7e-52 208.4 177 54.2
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 6.2e-52 208.0 177 54.8
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.4e-51 206.8 183 54.6
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.4e-51 206.8 173 54.9
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 4.0e-51 205.3 174 54.0
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 5.2e-51 204.9 169 55.0
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 5.2e-51 204.9 177 55.9
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 8.9e-51 204.1 174 53.4
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 8.9e-51 204.1 174 54.0
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 8.9e-51 204.1 174 53.4
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 2.0e-50 203.0 174 53.4
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 2.6e-50 202.6 177 53.7
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 2.9e-49 199.1 152 59.2
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 3.8e-49 198.7 173 54.3
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 8.4e-49 197.6 177 53.1
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.4e-48 196.1 143 63.6
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 1.2e-47 193.7 180 52.8
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 4.6e-47 191.8 203 46.8
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 7.8e-47 191.0 177 49.7
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.3e-46 190.3 177 49.7
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.3e-46 190.3 177 53.7
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.0e-46 189.1 156 57.1
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 5.1e-46 188.3 156 57.1
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 6.6e-46 188.0 183 49.7
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.5e-45 186.8 186 51.6
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 7.3e-45 184.5 152 57.2
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 3.6e-44 182.2 139 59.0
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.4e-43 179.5 156 53.2
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 9.9e-42 174.1 156 53.2
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 9.9e-42 174.1 131 61.1
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 2.9e-41 172.6 124 62.1
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 1.9e-40 169.9 175 46.9
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.0e-38 164.1 130 58.5
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.4e-35 153.7 98 70.4
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-34 149.8 98 69.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.4e-34 149.1 98 67.3
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 7.6e-34 147.9 98 67.3
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 3.2e-32 142.5 156 47.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.0e-30 136.0 108 60.2
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.9e-30 135.6 100 63.0
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.5e-29 133.7 89 68.5
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 9.6e-29 131.0 128 50.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.1e-28 129.8 83 72.3
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.4e-27 127.1 82 70.7
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 9.0e-27 124.4 83 71.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.3e-25 120.6 180 41.1
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 4.9e-25 118.6 155 41.3
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 2.8e-20 102.8 66 71.2
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.5e-18 97.1 83 60.2
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.2e-17 93.2 88 48.9
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.6e-12 77.0 183 26.8
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.7e-12 75.9 183 27.3
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-11 74.3 183 27.3
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-11 73.9 183 26.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.4e-11 73.9 183 27.9
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.4e-11 73.2 47 68.1
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 4.1e-11 72.4 183 26.2
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 5.3e-11 72.0 183 26.2
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 6.9e-11 71.6 186 25.8
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 9.0e-11 71.2 183 27.9
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.2e-10 70.9 174 26.4
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.5e-10 70.5 183 25.7
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 2.0e-10 70.1 183 25.7
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.0e-10 70.1 182 26.9
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.4e-10 69.3 183 25.1
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.5e-10 68.9 183 25.1
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 4.5e-10 68.9 183 25.7
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 5.9e-10 68.6 183 25.7
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.0e-09 67.8 183 24.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.0e-09 67.8 183 24.0
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.3e-09 67.4 180 25.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.3e-09 67.4 183 25.1
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.7e-09 67.0 183 24.6
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.2e-09 66.6 183 23.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.2e-09 66.6 183 24.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.0e-09 65.5 183 23.5
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 5.0e-09 65.5 183 23.5
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 6.5e-09 65.1 183 23.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 6.5e-09 65.1 183 23.5
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 8.5e-09 64.7 183 23.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.5e-08 63.2 138 27.5
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.5e-08 62.0 70 38.6
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 9.4e-08 61.2 45 57.8
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 2.7e-07 59.7 78 37.2


User provided reference genes

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