Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 2.0e-89 332.4 169 100.0
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.4e-26 123.6 117 50.4
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 1.9e-26 123.2 169 38.5
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 3.2e-26 122.5 115 47.8
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 3.2e-26 122.5 112 49.1
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 4.1e-26 122.1 117 48.7
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 4.1e-26 122.1 117 48.7
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 4.1e-26 122.1 117 48.7
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 4.1e-26 122.1 112 49.1
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 5.4e-26 121.7 128 47.7
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 5.4e-26 121.7 128 47.7
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 7.0e-26 121.3 128 47.7
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 7.0e-26 121.3 112 48.2
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 7.0e-26 121.3 128 48.4
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 9.2e-26 120.9 117 47.9
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 9.2e-26 120.9 117 47.9
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 9.2e-26 120.9 117 47.9
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 9.2e-26 120.9 117 47.9
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 9.2e-26 120.9 117 47.9
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 9.2e-26 120.9 117 47.9
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 9.2e-26 120.9 117 47.9
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 9.2e-26 120.9 128 46.9
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 9.2e-26 120.9 128 46.9
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 9.2e-26 120.9 128 46.9
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 9.2e-26 120.9 119 47.9
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 9.2e-26 120.9 112 50.0
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 9.2e-26 120.9 128 46.9
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 9.2e-26 120.9 128 46.9
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 1.2e-25 120.6 112 48.2
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 1.2e-25 120.6 116 47.4
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 1.2e-25 120.6 117 47.0
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 1.2e-25 120.6 112 49.1
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.2e-25 120.6 115 47.0
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 1.6e-25 120.2 112 48.2
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 1.6e-25 120.2 117 47.0
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 1.6e-25 120.2 117 47.9
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 1.6e-25 120.2 117 47.9
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 1.6e-25 120.2 117 47.9
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 1.6e-25 120.2 112 48.2
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 1.6e-25 120.2 117 47.0
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.6e-25 120.2 112 49.1
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.6e-25 120.2 112 49.1
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.6e-25 120.2 112 49.1
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 1.6e-25 120.2 112 49.1
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 1.6e-25 120.2 112 48.2
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.0e-25 119.8 112 50.0
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 2.0e-25 119.8 112 49.1
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 2.0e-25 119.8 112 48.2
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 2.0e-25 119.8 116 46.6
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 2.0e-25 119.8 112 50.0
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 49.1
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 49.1
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 49.1
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 47.3
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 47.3
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 47.3
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 49.1
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 47.3
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 47.3
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 2.7e-25 119.4 112 49.1
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 2.7e-25 119.4 117 47.0
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 3.5e-25 119.0 128 47.7
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.5e-25 119.0 112 48.2
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.5e-25 119.0 112 48.2
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.5e-25 119.0 123 45.5
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 3.5e-25 119.0 112 49.1
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 3.5e-25 119.0 112 49.1
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 4.6e-25 118.6 128 47.7
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 47.3
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 47.3
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 47.3
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 47.3
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 50.0
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 48.2
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 47.3
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 48.2
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 48.2
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 4.6e-25 118.6 112 48.2
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 6.0e-25 118.2 112 48.2
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 6.0e-25 118.2 112 47.3
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 6.0e-25 118.2 112 48.2
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 6.0e-25 118.2 112 48.2
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 6.0e-25 118.2 112 48.2
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 6.0e-25 118.2 112 47.3
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 6.0e-25 118.2 112 48.2
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 6.0e-25 118.2 112 48.2
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 47.3
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 47.3
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 47.3
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 47.3
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 47.3
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 48.2
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 48.2
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 48.2
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 48.2
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 47.3
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 50.9
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 48.2
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 48.2
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 7.8e-25 117.9 112 48.2
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 1.0e-24 117.5 112 47.3
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.0e-24 117.5 112 48.2
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.0e-24 117.5 112 48.2
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.0e-24 117.5 116 45.7
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.0e-24 117.5 112 47.3
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.3e-24 117.1 112 48.2
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-24 117.1 112 46.4
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 1.3e-24 117.1 115 49.6
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.3e-24 117.1 112 48.2
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.3e-24 117.1 112 50.0
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 1.3e-24 117.1 112 47.3
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.3e-24 117.1 112 46.4
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.7e-24 116.7 112 47.3
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.7e-24 116.7 112 47.3
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.7e-24 116.7 112 46.4
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 2.3e-24 116.3 112 47.3
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 2.3e-24 116.3 112 46.4
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 2.3e-24 116.3 112 46.4
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 2.3e-24 116.3 112 47.3
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 3.0e-24 115.9 112 47.3
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 3.0e-24 115.9 112 47.3
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 3.0e-24 115.9 112 48.2
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 3.0e-24 115.9 109 48.6
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.0e-24 115.9 112 46.4
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 3.9e-24 115.5 112 47.3
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 3.9e-24 115.5 120 46.7
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 3.9e-24 115.5 112 47.3
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 3.9e-24 115.5 112 46.4
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 3.9e-24 115.5 128 46.9
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 6.6e-24 114.8 109 45.9
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 6.6e-24 114.8 109 46.8
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 8.6e-24 114.4 112 46.4
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 8.6e-24 114.4 112 48.2
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 8.6e-24 114.4 112 47.3
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 1.1e-23 114.0 124 45.2
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 1.5e-23 113.6 109 45.9
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 1.5e-23 113.6 112 45.5
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.5e-23 113.6 117 44.4
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 1.9e-23 113.2 109 47.7
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 2.5e-23 112.8 111 45.0
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 5.6e-23 111.7 111 45.9
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 9.5e-23 110.9 104 48.1
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 1.6e-22 110.2 130 43.1
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 1.6e-22 110.2 109 46.8
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.1e-22 109.8 104 48.1
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 4.7e-22 108.6 130 42.3
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.1e-21 107.5 105 45.7
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.4e-21 107.1 114 46.5
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 2.3e-21 106.3 101 46.5
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.0e-21 105.5 109 44.0
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 4.0e-21 105.5 115 41.7
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 8.9e-21 104.4 104 42.3
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-20 104.0 107 42.1
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-20 104.0 107 42.1
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.2e-20 104.0 104 45.2
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 2.9e-19 99.4 98 43.9
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.9e-19 98.6 108 42.6
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.4e-19 98.2 104 40.4
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 7.0e-18 94.7 97 44.3
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 1.6e-17 93.6 112 42.9
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 6.0e-17 91.7 77 50.6
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.8e-17 91.3 104 39.4
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.7e-16 90.1 74 54.1
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 1.7e-16 90.1 89 47.2
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 3.9e-16 89.0 74 52.7
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 5.1e-16 88.6 86 47.7
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.6e-16 88.2 109 42.2
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.6e-16 88.2 109 42.2
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 8.6e-16 87.8 76 50.0
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 6.8e-13 78.2 128 38.3
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 5.8e-12 75.1 112 37.5
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 2.2e-11 73.2 87 43.7
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.2e-10 69.3 62 46.8
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 5.4e-10 68.6 110 34.5
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.6e-09 67.0 58 53.4
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 2.1e-09 66.6 47 59.6
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 5.1e-08 62.0 69 40.6
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 6.6e-08 61.6 44 59.1
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 6.6e-08 61.6 44 59.1


User provided reference genes

Program Settings